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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G451460
Reference: TK1151 Chr: Chr02 Coordinates: 114859461-114864310 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2252 bp · TkA02G451460|TK1151|cDNA

TCTGTACGCGCAACAGAAAGAAGCCCTAATTATACCCATTTCTCTGAAGTCTGAAGCCAAGCTCCACTCCATCATCGAAGAATTCACGAAAACTTCGGCTATCGAATTCAATCCTTCAAATCCTAATCTGGACCAGGTAAATTGATCTCATGGACTTCGACGAGTATGACTACTTGGAGAAGACCGTCGACGAGCCTGACAGCCGGAACGGTTCTTCTTCGAAGGACAAGGACGGCGGCGCCGACAAGAGAGATAAGGGT...

CDS

Download CDS FASTA

1776 bp · TkA02G451460|TK1151|CDS

ATGGACTTCGACGAGTATGACTACTTGGAGAAGACCGTCGACGAGCCTGACAGCCGGAACGGTTCTTCTTCGAAGGACAAGGACGGCGGCGCCGACAAGAGAGATAAGGGTTACAGACGGAGGGAAAGAGATGATGACAACGAGGAAGATGACCGAATCGTAGAAGAAAACCGAAAGAGTAAGAAAAGCAAAGGAGATGAAGAGAACGGTGGGAGTAGGAGAGATAGAGACCGTGACCGTGACCGTGAGGAGAGGTCTTC...

Protein

Download Protein FASTA

591 aa · TkA02G451460|TK1151|PROTEIN

MDFDEYDYLEKTVDEPDSRNGSSSKDKDGGADKRDKGYRRRERDDDNEEDDRIVEENRKSKKSKGDEENGGSRRDRDRDRDREERSSRSERHRSSGRDPEREVDRERDRDRRRSSRDRERSSRDMEKDKDRERERSSRDKDKDREKEKKDRERDREKEREREKREREREKERERSRRSRSHSRLEREREKELLREKERELESKESRRLKDKKEAEPEADPERDQRTVFAYQMPLKATEYDVYEFFSKAGKVRDVRLIMDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G451460
TK1151 IDTkA02G451460
OH-1004 IDLXL04_014131
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 64.975 / OH-1004 57.658
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G451460
LocationChr02:114859461-114864310 (-)
DescriptionSimilar to RBM39: RNA-binding protein 39
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0015630 microtubule cytoskeleton Cellular Component
KEGG gene cross-reference
hsa:55147
hsa:9584
mmu:170791
pon:100172241
spo:2542545
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973
Rank 1 · TkA02G451460 · TK1151
Cytoplasm0.104
Rank 2 · TkA02G451460 · TK1151
Cell membrane0.023
Rank 3 · TkA02G451460 · TK1151
Endoplasmic reticulum0.010
Rank 4 · TkA02G451460 · TK1151
Mitochondrion0.006
Rank 5 · TkA02G451460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22976RRM_10225-292 aa
PF16367RRM_7225-252 aa
PF16842RRM_occluded225-261 aa
PF00076RRM_1232-294 aa
PF14605Nup35_RRM_2237-282 aa
PF16367RRM_7328-376 aa
PF22976RRM_10329-388 aa
PF28976RRM_ACIN1329-386 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G451460PF22976RRM_102252920.0001722.3
TkA02G451460PF16367RRM_72252520.0003121.4
TkA02G451460PF16842RRM_occluded2252610.0414.5
TkA02G451460PF00076RRM_12322941.9e-42143.7
TkA02G451460PF14605Nup35_RRM_22372820.003218.0
TkA02G451460PF16367RRM_73283760.0003121.4
TkA02G451460PF22976RRM_103293880.0001722.3
TkA02G451460PF28976RRM_ACIN13293860.0004421.0
TkA02G451460PF00076RRM_13304001.9e-42143.7
TkA02G451460PF16842RRM_occluded3344060.0414.5
TkA02G451460PF26250RRM_RdRP1_23593890.09713.8
TkA02G451460PF29326RRM_MUD2_C3734041.8e-0731.9
TkA02G451460PF15519RBM39linker4205151.8e-2074.1
TkA02G451460PF29326RRM_MUD2_C4965851.8e-0731.9
TkA02G451460PF00076RRM_15215721.9e-42143.7
TkA02G451460PF16842RRM_occluded5225730.0414.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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