TkA02G446080 | RubberDandelionOmics

Gene overview

TkA02G446080

Reference: TK1151 Chr: Chr02 Coordinates: 113378519-113388919 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2895 bp · TkA02G446080|TK1151|cDNA

AAAAAGATGGGCAAATTAAATTAAGTTGACTTCAGGTCAACCACGAAATAAATTTCTCCATCAAATAATGGAACAAGGCATCACCTTTGAGCATAGAAATTCAGTTTGGTTTTGATTCTTATTTTCTTCGCCTTGATTCCTTGAATAGCCATTGTTGAAAAAATGCAGGCGTTTCTAGTCATGCGTTTACTCATCTTGATTTCGTTAACAGCATTAACAGAAGCACAATACGGCGACAACCCAGGATGTCCTAGCAGGTG...

CDS

Download CDS FASTA

2547 bp · TkA02G446080|TK1151|CDS

ATGCAGGCGTTTCTAGTCATGCGTTTACTCATCTTGATTTCGTTAACAGCATTAACAGAAGCACAATACGGCGACAACCCAGGATGTCCTAGCAGGTGTGGGCGGGTCTTGATTGCCTATCCTTTCGGGATCGGTACAAAATGTTCTGCAAACTACTGGTACACTGTTCATTGTAATTCATCAACACCATATCTATCTTCCCTAAAGAACGTAGAGGTCCTGTATACGGATTCGAGCACTATCTCCGTTAACATGTCTGT...

Protein

Download Protein FASTA

848 aa · TkA02G446080|TK1151|PROTEIN

MQAFLVMRLLILISLTALTEAQYGDNPGCPSRCGRVLIAYPFGIGTKCSANYWYTVHCNSSTPYLSSLKNVEVLYTDSSTISVNMSVIKADCNNPFKNIINLVQNTSHGKNPFRFSRSNNVFVVKGCGSGAIMENGTVVSGCSTTCRNNTLSDLNNCFGVGCCQTTIPHDLKSFTFNLSGLETKKHGNETCGSAFLVETFYRESISEEHSFAPVSLSWNSNSTRCNYMCGNVMIPYPFGIGKGCYYNKWFNVDCISSTPY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G446080`
TK1151 ID	TkA02G446080
OH-1004 ID	LXL04_014231
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 99.764 / OH-1004 84.515 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G446080

Location Chr02:113378519-113388919 (+)

Description Similar to WAKL2: Wall-associated receptor kinase-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16130`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g16260`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g16120`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g69730`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g16110`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014231 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0010045 response to nickel cation Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009986 cell surface Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G16120

ath:AT1G16130

ath:AT1G16150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.877

Rank 1 · TkA02G446080 · TK1151

Cytoplasm0.076

Rank 2 · TkA02G446080 · TK1151

Endoplasmic reticulum0.068

Rank 3 · TkA02G446080 · TK1151

Nucleus0.045

Rank 4 · TkA02G446080 · TK1151

Lysosome / Vacuole0.026

Rank 5 · TkA02G446080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind29-80 aa

PF08488WAK156-206 aa

PF13947GUB_WAK_bind225-282 aa

PF08488WAK266-278 aa

PF08488WAK350-397 aa

PF13947GUB_WAK_bind435-452 aa

PF00069Pkinase537-803 aa

PF07714PK_Tyr_Ser-Thr540-804 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G446080	`PF13947`	GUB_WAK_bind	29	80	6e-18	65.7
TkA02G446080	`PF08488`	WAK	156	206	1.4e-09	39.0
TkA02G446080	`PF13947`	GUB_WAK_bind	225	282	6e-18	65.7
TkA02G446080	`PF08488`	WAK	266	278	1.4e-09	39.0
TkA02G446080	`PF08488`	WAK	350	397	1.4e-09	39.0
TkA02G446080	`PF13947`	GUB_WAK_bind	435	452	6e-18	65.7
TkA02G446080	`PF00069`	Pkinase	537	803	1.7e-47	162.8
TkA02G446080	`PF07714`	PK_Tyr_Ser-Thr	540	804	6.7e-47	160.7
TkA02G446080	`PF03109`	ABC1	541	568	0.0076	16.1
TkA02G446080	`PF03109`	ABC1	645	690	0.0076	16.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q7X8C5`	Arabidopsis thaliana	sp\|Q7X8C5\|WAKLB_ARATH Wall-associated receptor kinase-like 2	44.600%	Swiss-Prot	Medium
`Q9SA25`	Arabidopsis thaliana	sp\|Q9SA25\|WAKLG_ARATH Wall-associated receptor kinase-like 8	43.800%	Swiss-Prot	Medium
`Q9S9M5`	Arabidopsis thaliana	sp\|Q9S9M5\|WAKLA_ARATH Wall-associated receptor kinase-like 1	46.000%	Swiss-Prot	Medium
`Q9C9L5`	Arabidopsis thaliana	sp\|Q9C9L5\|WAKLH_ARATH Wall-associated receptor kinase-like 9	39.300%	Swiss-Prot	Medium
`Q8GXQ3`	Arabidopsis thaliana	sp\|Q8GXQ3\|WAKLF_ARATH Wall-associated receptor kinase-like 6	44.600%	Swiss-Prot	Medium

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