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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G441170
Reference: TK1151 Chr: Chr02 Coordinates: 112138711-112142391 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2287 bp · TkA02G441170|TK1151|cDNA

GCCCATAATTTTTTTTTCCAAATATACATTTATCATTGACGATGACTATATACGTGTCCTCTAAAGTAGGAAAAACTCGAACATCGTTTTATTTCCGAACCGAGGGCAATAACTCAATAAGTAGGTTGTTTCGACAATAAAAACCCTTTCTGAAAGCTTGAACTGGAGGGAAAAAGTGGACACGTCACACGTGTGTACCAAGGTGAGAGATGCCGGTGGCGCGACCAGAATCGTCTGATTCCAGGGTAATTGCTCACGTC...

CDS

Download CDS FASTA

1788 bp · TkA02G441170|TK1151|CDS

ATGCCGGTGGCGCGACCAGAATCGTCTGATTCCAGGGTAATTGCTCACGTCGACATGGATTGTTTCTACGTTCAAGTGGAACAACGCAAACAACCTCACTTAAGAGGTCAACCAACTGCTGTAGTACAATACAACTCCTGGCAAGGCGGGGGCCTGATTGCTGTCGGTTACGAGGCTAGAAAAGATGGAGTGAAACGCTCAATGCGAGGTGATGAGGCAAAAAAAGTTTGCCCCCAAATTCATCTGGTTCAAGTTCCTGT...

Protein

Download Protein FASTA

595 aa · TkA02G441170|TK1151|PROTEIN

MPVARPESSDSRVIAHVDMDCFYVQVEQRKQPHLRGQPTAVVQYNSWQGGGLIAVGYEARKDGVKRSMRGDEAKKVCPQIHLVQVPVARGKADLNIYRSAGSEVVSILSRKGRCERASIDEVYLDLTEASEKMLKETPPESLENIHEEVLKSHVLGLIHNENDTKETVKQWLQQKEGDHRDKLLACGALIVAELRLQVLQETEFTCSAGIAHNKMLAKLASGMNKPAQQTIVPFSSVKELLETLPIKKMKQLGGKLGSSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G441170
TK1151 IDTkA02G441170
OH-1004 IDLXL04_014298
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G441170
LocationChr02:112138711-112142391 (-)
DescriptionSimilar to POLH: DNA polymerase eta
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44740 Error-free DNA polymerase specifically involved in DNA repair.
Analysis of UV-induced mutation spectra in Escherichia coli by DNA polymerase eta from Arabidopsis thaliana.2006 · DOI: 10.1016/j.mrfmmm.2006.05.036
Two translesion synthesis DNA polymerase genes, AtPOLH and AtREV1, are involved in development and UV light resistance in Arabidopsis.2008 · DOI: 10.1016/j.jplph.2007.11.012
Arabidopsis thaliana Y-family DNA polymerase eta catalyses translesion synthesis and interacts functionally with PCNA2.2008 · DOI: 10.1111/j.1365-313x.2008.03562.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014298 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000731 DNA synthesis involved in DNA repair Biological Process
GO:0006281 DNA repair Biological Process
GO:0006282 regulation of DNA repair Biological Process
GO:0006290 pyrimidine dimer repair Biological Process
GO:0006301 DNA damage tolerance Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0009314 response to radiation Biological Process
GO:0009650 UV protection Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010225 response to UV-C Biological Process
GO:0019985 translesion synthesis Biological Process
GO:0042276 error-prone translesion synthesis Biological Process
KEGG gene cross-reference
ath:AT5G44740
dme:Dmel_CG7143
hsa:5429
mmu:80905
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.872
Rank 1 · TkA02G441170 · TK1151
Cytoplasm0.194
Rank 2 · TkA02G441170 · TK1151
Mitochondrion0.056
Rank 3 · TkA02G441170 · TK1151
Cell membrane0.024
Rank 4 · TkA02G441170 · TK1151
Golgi apparatus0.013
Rank 5 · TkA02G441170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00817IMS17-221 aa
PF17104YBL010C_LAA2116-182 aa
PF29121AMN1_C139-174 aa
PF14377UBM193-202 aa
PF11798IMS_HHH236-265 aa
PF21704POLH-Rev1_HhH244-299 aa
PF21999IMS_HHH_1244-260 aa
PF21999IMS_HHH_1263-299 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G441170PF00817IMS172218.1e-42143.3
TkA02G441170PF17104YBL010C_LAA21161820.03514.9
TkA02G441170PF29121AMN1_C1391741.410.4
TkA02G441170PF14377UBM1932020.0003820.5
TkA02G441170PF11798IMS_HHH2362650.001519.3
TkA02G441170PF21704POLH-Rev1_HhH2442998.6e-2174.7
TkA02G441170PF21999IMS_HHH_12442601.2e-0526.4
TkA02G441170PF21999IMS_HHH_12632991.2e-0526.4
TkA02G441170PF08277PAN_34414943.08.5
TkA02G441170PF21999IMS_HHH_14664851.2e-0526.4
TkA02G441170PF29121AMN1_C4825281.410.4
TkA02G441170PF17104YBL010C_LAA24945060.03514.9
TkA02G441170PF00817IMS5245678.1e-42143.3
TkA02G441170PF14377UBM5515680.0003820.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H2D5Arabidopsis thalianasp|Q8H2D5|POLH_ARATH DNA polymerase eta55.400%Swiss-ProtHigh

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