TkA02G440920 | RubberDandelionOmics

Gene overview

TkA02G440920

Reference: TK1151 Chr: Chr02 Coordinates: 112063379-112069439 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1725 bp · TkA02G440920|TK1151|cDNA

AATTCAAATTTCCATTTCCCGTTTTCTTTACGCCATGTCCAATACACAACCCCTCAAAACATTTCTACTTTCTCTCTCTCTTTTAAGTCTGCTTGACTACTTGTTGACTTCTTCTTAACTTAATTTCCACAATCTCCATTTCTAAGCTATACATAAGAAACCTTCCGTCTCTGTTCACCTTCATATCGAATTCATTTTCAATTTCTGAAACTGGAATAGAAATCGGAATAAGATGAAGATGGTAGGTTGGGAATTGATGA...

CDS

Download CDS FASTA

831 bp · TkA02G440920|TK1151|CDS

ATGCGCAAATATTGGAGAGAGGAGGGTACAACGATGTTTACGCCACATTATATAACGTGGTTTTGCCCTAAACCGTTTGTATTGAGCGATCAGTGTAGATCACAGTGTATTAATCATGGAAGGTATTGCGCGCCCGACCCTGAGCTGGATTTTGGTGAAGGGTATAATGGGAAAGACGTGGTGTTTGAGAATTTGAGACAACTTTGTGTTCATAGAGTTGCTAATGAGACTAATAGGTCTTGGGTGTGGTGGGATTATGT...

Protein

Download Protein FASTA

276 aa · TkA02G440920|TK1151|PROTEIN

MRKYWREEGTTMFTPHYITWFCPKPFVLSDQCRSQCINHGRYCAPDPELDFGEGYNGKDVVFENLRQLCVHRVANETNRSWVWWDYVTDFHIRCSMKKKKYSNECAEEVIKSLGLPSEKIRKCMGDPEADVENEVLNNEQNIQLGRGSRGDVTILPTLVINNVQYRGEIGKNRCATSRMCGIKETSDPPICLSGDLETNECLERNGGCWIDSKHGISACKDTFRGRVCECPTINGVQYRGDGYTSCEAFGAGRCTVNNGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G440920`
TK1151 ID	TkA02G440920
OH-1004 ID	LXL04_038496
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	65.900
Protein coverage (%)	TK1151 96.739 / OH-1004 41.460 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G440920

Location Chr02:112063379-112069439 (-)

Description Similar to VSR3: Vacuolar-sorting receptor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30900`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At4g20110`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g14740`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g14720`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038496 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006896 Golgi to vacuole transport Biological Process

GO:0007034 vacuolar transport Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G14720

ath:AT2G14740

ath:AT2G30290

ath:AT3G52850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.414

Rank 1 · TkA02G440920 · TK1151

Lysosome / Vacuole0.283

Rank 2 · TkA02G440920 · TK1151

Cytoplasm0.169

Rank 3 · TkA02G440920 · TK1151

Endoplasmic reticulum0.126

Rank 4 · TkA02G440920 · TK1151

Cell membrane0.069

Rank 5 · TkA02G440920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25011VSR_TRX7-172 aa

PF14670FXa_inhibition31-43 aa

PF29974RIPR_EGF-like_7th34-39 aa

PF14670FXa_inhibition94-106 aa

PF29974RIPR_EGF-like_7th198-213 aa

PF14670FXa_inhibition201-242 aa

PF25011VSR_TRX221-241 aa

PF29974RIPR_EGF-like_7th254-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G440920	`PF25011`	VSR_TRX	7	172	3.2e-76	256.4
TkA02G440920	`PF14670`	FXa_inhibition	31	43	9.6	7.2
TkA02G440920	`PF29974`	RIPR_EGF-like_7th	34	39	1.9	9.0
TkA02G440920	`PF14670`	FXa_inhibition	94	106	9.6	7.2
TkA02G440920	`PF29974`	RIPR_EGF-like_7th	198	213	1.9	9.0
TkA02G440920	`PF14670`	FXa_inhibition	201	242	9.6	7.2
TkA02G440920	`PF25011`	VSR_TRX	221	241	3.2e-76	256.4
TkA02G440920	`PF29974`	RIPR_EGF-like_7th	254	264	1.9	9.0
TkA02G440920	`PF14670`	FXa_inhibition	254	262	9.6	7.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYH7`	Arabidopsis thaliana	sp\|Q9FYH7\|VSR6_ARATH Vacuolar-sorting receptor 6	70.700%	Swiss-Prot	High
`Q8L7E3`	Arabidopsis thaliana	sp\|Q8L7E3\|VSR7_ARATH Vacuolar-sorting receptor 7	71.400%	Swiss-Prot	High
`O80977`	Arabidopsis thaliana	sp\|O80977\|VSR3_ARATH Vacuolar-sorting receptor 3	66.700%	Swiss-Prot	High
`Q56ZQ3`	Arabidopsis thaliana	sp\|Q56ZQ3\|VSR4_ARATH Vacuolar-sorting receptor 4	65.200%	Swiss-Prot	High

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