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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G431720
Reference: TK1151 Chr: Chr02 Coordinates: 109634322-109637639 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3168 bp · TkA02G431720|TK1151|cDNA

ATGATATCATTGCGTGGTTCATTCTTGAATAACCCATTTCAACCTTTCCCACGTAAATCAGCAACAAATTTGCCAAAGTATTTTTGTGGGAAACTCATTAGATTGAGATTAGCTGCTTTGAGTACTTCTGCAAGTTTCCGAATCGTCGATCAAGAAGATGAGAAGGGCTCGGAAAGTTTTCTCACGAAGGAGAATAACAATTCCGGCCGAGTTTTTGCTAATCAGCAGACATACTGTTGGCTCTTAGAAGGATATACGAG...

CDS

Download CDS FASTA

3168 bp · TkA02G431720|TK1151|CDS

ATGATATCATTGCGTGGTTCATTCTTGAATAACCCATTTCAACCTTTCCCACGTAAATCAGCAACAAATTTGCCAAAGTATTTTTGTGGGAAACTCATTAGATTGAGATTAGCTGCTTTGAGTACTTCTGCAAGTTTCCGAATCGTCGATCAAGAAGATGAGAAGGGCTCGGAAAGTTTTCTCACGAAGGAGAATAACAATTCCGGCCGAGTTTTTGCTAATCAGCAGACATACTGTTGGCTCTTAGAAGGATATACGAG...

Protein

Download Protein FASTA

1055 aa · TkA02G431720|TK1151|PROTEIN

MISLRGSFLNNPFQPFPRKSATNLPKYFCGKLIRLRLAALSTSASFRIVDQEDEKGSESFLTKENNNSGRVFANQQTYCWLLEGYTSSGPLIDAKKLHGRILKSGFDRDYVICTRLADVYASQGDLTDACQVIDEMPNRDVTFWNNLIYGLTGKKLTTMVFGLFSKMLAENLHPDEVTFTNVLKATTEDNFHHSNIKQIHAKIIRHGFGTNHVVCNPLINLYSKKGHITTAKSIFQGLGMKDNVSWVAMISGLSQNGHEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G431720
TK1151 IDTkA02G431720
OH-1004 IDLXL04_014375
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G431720
LocationChr02:109634322-109637639 (-)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At5g09950 Putative pentatricopeptide repeat-containing protein At5g09950. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
ath:AT5G09950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.651
Rank 1 · TkA02G431720 · TK1151
Plastid0.226
Rank 2 · TkA02G431720 · TK1151
Nucleus0.045
Rank 3 · TkA02G431720 · TK1151
Cytoplasm0.031
Rank 4 · TkA02G431720 · TK1151
Cell membrane0.007
Rank 5 · TkA02G431720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_274-85 aa
PF12854PPR_174-97 aa
PF01535PPR81-106 aa
PF13812PPR_3104-137 aa
PF13041PPR_2109-141 aa
PF14559TPR_19109-140 aa
PF18768RNPP_C109-143 aa
PF01535PPR112-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G431720PF13041PPR_274853.8e-97319.0
TkA02G431720PF12854PPR_174973e-38129.9
TkA02G431720PF01535PPR811068.9e-85273.9
TkA02G431720PF13812PPR_31041378.3e-44148.2
TkA02G431720PF13041PPR_21091413.8e-97319.0
TkA02G431720PF14559TPR_191091400.002618.8
TkA02G431720PF18768RNPP_C1091430.02514.8
TkA02G431720PF01535PPR1121408.9e-85273.9
TkA02G431720PF13181TPR_81121320.04414.7
TkA02G431720PF13176TPR_71131340.002718.4
TkA02G431720PF07719TPR_21131320.02115.6
TkA02G431720PF23276TPR_241151428.8e-2174.9
TkA02G431720PF13428TPR_141151365.6e-0524.1
TkA02G431720PF13431TPR_171151310.113.6
TkA02G431720PF20431E_motif1161381.5e-2383.5
TkA02G431720PF12895ANAPC31161360.01816.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365055.900%Swiss-ProtHigh
Q9FIB2Arabidopsis thalianasp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g0995035.700%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic37.400%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317033.200%Swiss-ProtMedium
Q9ZUW3Arabidopsis thalianasp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g2761035.800%Swiss-ProtMedium

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