TkA02G429210 | RubberDandelionOmics

Gene overview

TkA02G429210

Reference: TK1151 Chr: Chr02 Coordinates: 109049144-109049762 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

333 bp · TkA02G429210|TK1151|cDNA

ATGACACACACCTGTACGGTTGTACCTCTTCTTGAAGCCCTACTTCGTTGGAGAGAAACAGACCTCAGTCGTAACTACCTCAATGGAACAATACGTCCACAATGGGCTCCTATGCGCTTGGGTGACCTCTCTCTCATGGGAAACAGATTATCAGGCCCATTTCCAAGAGTTCTCACCAGAATTACCACCCTTGTAAATCTAAGCATAGAAGGAAACCGTTTTTTCAGGATCCATACTCCAAGAGATTGTAAACATGAAGA...

CDS

Download CDS FASTA

333 bp · TkA02G429210|TK1151|CDS

ATGACACACACCTGTACGGTTGTACCTCTTCTTGAAGCCCTACTTCGTTGGAGAGAAACAGACCTCAGTCGTAACTACCTCAATGGAACAATACGTCCACAATGGGCTCCTATGCGCTTGGGTGACCTCTCTCTCATGGGAAACAGATTATCAGGCCCATTTCCAAGAGTTCTCACCAGAATTACCACCCTTGTAAATCTAAGCATAGAAGGAAACCGTTTTTTCAGGATCCATACTCCAAGAGATTGTAAACATGAAGA...

Protein

Download Protein FASTA

110 aa · TkA02G429210|TK1151|PROTEIN

MTHTCTVVPLLEALLRWRETDLSRNYLNGTIRPQWAPMRLGDLSLMGNRLSGPFPRVLTRITTLVNLSIEGNRFFRIHTPRDCKHEESAETVIIFSPFKFLPYILILNCD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G429210`
TK1151 ID	TkA02G429210
OH-1004 ID	LXL04_015626
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	81.600
Protein coverage (%)	TK1151 87.273 / OH-1004 27.249 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G429210

Location Chr02:109049144-109049762 (-)

Description Similar to At1g07650: Probable LRR receptor-like serine/threonine-protein kinase At1g07650

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015626 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53420

ath:AT1G53430

ath:AT3G14840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.564

Rank 1 · TkA02G429210 · TK1151

Cytoplasm0.152

Rank 2 · TkA02G429210 · TK1151

Nucleus0.093

Rank 3 · TkA02G429210 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA02G429210 · TK1151

Cell membrane0.063

Rank 5 · TkA02G429210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_120-35 aa

PF00560LRR_142-58 aa

PF00560LRR_164-75 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G429210	`PF00560`	LRR_1	20	35	0.0016	18.8
TkA02G429210	`PF00560`	LRR_1	42	58	0.0016	18.8
TkA02G429210	`PF00560`	LRR_1	64	75	0.0016	18.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`C0LGE0`	Arabidopsis thaliana	sp\|C0LGE0\|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650	55.700%	Swiss-Prot	Medium

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