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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G427710
Reference: TK1151 Chr: Chr02 Coordinates: 108685394-108686062 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

669 bp · TkA02G427710|TK1151|cDNA

ATGGAGATTTTCAAGGTTTTTTTAATGGGTTTGCTCTTGTTTGGAGCAAACGCCATTGTTCTTGAAGATGACAAAAGAGCATTGTTGGATTTCATGAACAATTTTCCACACTCACGCTCACTAAACTGGGATTCAAACTCAAGTAGTGTGTGTAATGAATGGACTGGAGTCACGTGCAGTGAAGACGGTTTACGTGTCACTGCTCTCCGGCTTCCTGGCGTTGGGTTTAACGGTGACATTCCGACGAACACCATTAGCAG...

CDS

Download CDS FASTA

669 bp · TkA02G427710|TK1151|CDS

ATGGAGATTTTCAAGGTTTTTTTAATGGGTTTGCTCTTGTTTGGAGCAAACGCCATTGTTCTTGAAGATGACAAAAGAGCATTGTTGGATTTCATGAACAATTTTCCACACTCACGCTCACTAAACTGGGATTCAAACTCAAGTAGTGTGTGTAATGAATGGACTGGAGTCACGTGCAGTGAAGACGGTTTACGTGTCACTGCTCTCCGGCTTCCTGGCGTTGGGTTTAACGGTGACATTCCGACGAACACCATTAGCAG...

Protein

Download Protein FASTA

222 aa · TkA02G427710|TK1151|PROTEIN

MEIFKVFLMGLLLFGANAIVLEDDKRALLDFMNNFPHSRSLNWDSNSSSVCNEWTGVTCSEDGLRVTALRLPGVGFNGDIPTNTISRLSALQILSLRSNGISGSFPVDFYNLKNLSLLYLQFNQFSGELPLDFFVWKNLTIINLSNNKFNGSIPSSISSLTRLSALNLANNSLIGQIPDLRMQNCKFLIYQTIISLASFNFLSVLEVGLWLKVCWVSNPTNK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G427710
TK1151 IDTkA02G427710
OH-1004 IDLXL04_011852
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)49.100
Protein coverage (%)TK1151 47.748 / OH-1004 16.692
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G427710
LocationChr02:108685394-108686062 (-)
DescriptionSimilar to At4g23740: Probable inactive receptor kinase At4g23740
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g23740 Probable inactive receptor kinase At4g23740. No verified direct reference in this release
At5g24100 Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100. No verified direct reference in this release
At3g08680 Probable inactive receptor kinase At3g08680. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011852 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G64210
ath:AT2G26730
ath:AT4G23740
ath:AT5G24100
ath:AT5G53320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.633
Rank 1 · TkA02G427710 · TK1151
Endoplasmic reticulum0.123
Rank 2 · TkA02G427710 · TK1151
Extracellular0.088
Rank 3 · TkA02G427710 · TK1151
Cytoplasm0.078
Rank 4 · TkA02G427710 · TK1151
Nucleus0.054
Rank 5 · TkA02G427710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_222-60 aa
PF00560LRR_139-48 aa
PF13855LRR_879-125 aa
PF23598LRR_1480-121 aa
PF12799LRR_491-125 aa
PF00560LRR_191-112 aa
PF13516LRR_691-103 aa
PF00560LRR_1114-133 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G427710PF08263LRRNT_222605.2e-1143.3
TkA02G427710PF00560LRR_139484.1e-1038.5
TkA02G427710PF13855LRR_8791258.2e-1451.8
TkA02G427710PF23598LRR_14801211.1e-0628.3
TkA02G427710PF12799LRR_4911253.9e-1040.3
TkA02G427710PF00560LRR_1911124.1e-1038.5
TkA02G427710PF13516LRR_6911030.3711.7
TkA02G427710PF00560LRR_11141334.1e-1038.5
TkA02G427710PF13516LRR_61141280.3711.7
TkA02G427710PF23598LRR_141171961.1e-0628.3
TkA02G427710PF13855LRR_81321738.2e-1451.8
TkA02G427710PF12799LRR_41371813.9e-1040.3
TkA02G427710PF00560LRR_11381604.1e-1038.5
TkA02G427710PF13516LRR_61381510.3711.7
TkA02G427710PF00560LRR_11631794.1e-1038.5
TkA02G427710PF13516LRR_61631740.3711.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SUQ3Arabidopsis thalianasp|Q9SUQ3|Y4374_ARATH Probable inactive receptor kinase At4g2374057.900%Swiss-ProtMedium
Q9FL63Arabidopsis thalianasp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g2410058.300%Swiss-ProtLow
Q9C9Y8Arabidopsis thalianasp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g0868053.500%Swiss-ProtLow

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