TkA02G425400 | RubberDandelionOmics

Gene overview

TkA02G425400

Reference: TK1151 Chr: Chr02 Coordinates: 108041626-108044408 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1695 bp · TkA02G425400|TK1151|cDNA

ATGTTTTTCAAATATGATTTTAAAAGTCTTCCGCTACGATTTTCGTTAAAGATAACATTCGTTTTTCGAAAAAAAATTAGAGCAAAAATCACGGTGTTACATTCTAAGGAAGACTTATCGTTGCGGAATGATTCTCTCAGAGTGCTTGCCGATAAGGATGGGAGAGAGTCTCGGGACCTGGCGCAAAAAGAAAAAGTTAAATGGACTGCTGTAGGAGACGAAAATACAAAGTTTTTTCATGAGATGCTTAAAAAGAAAAG...

CDS

Download CDS FASTA

1695 bp · TkA02G425400|TK1151|CDS

ATGTTTTTCAAATATGATTTTAAAAGTCTTCCGCTACGATTTTCGTTAAAGATAACATTCGTTTTTCGAAAAAAAATTAGAGCAAAAATCACGGTGTTACATTCTAAGGAAGACTTATCGTTGCGGAATGATTCTCTCAGAGTGCTTGCCGATAAGGATGGGAGAGAGTCTCGGGACCTGGCGCAAAAAGAAAAAGTTAAATGGACTGCTGTAGGAGACGAAAATACAAAGTTTTTTCATGAGATGCTTAAAAAGAAAAG...

Protein

Download Protein FASTA

564 aa · TkA02G425400|TK1151|PROTEIN

MFFKYDFKSLPLRFSLKITFVFRKKIRAKITVLHSKEDLSLRNDSLRVLADKDGRESRDLAQKEKVKWTAVGDENTKFFHEMLKKKRRTMAVRGVMKNGVWLDESGLVKAEFLQHFASRFAPVLGPRPTLGLDLPNRLSTIMGIGVGKRETKELAAIVGCGVSLLPFKYLGVPVGCNMERVMFWDPYMSLYKMPVQVNKALEAIQNKFFLGGELDEKKMTWVAWNKCLASQSADGLGVGSIFALNRGLLFNWIWRFRVNP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G425400`
TK1151 ID	TkA02G425400
OH-1004 ID	LXL04_015264
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	34.100
Protein coverage (%)	TK1151 76.773 / OH-1004 49.255 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G425400`
Location	Chr02:108041626-108044408 (+)
Description	Similar to MLO-H1: MLO protein homolog 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_015264` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0050832 defense response to fungus Biological Process GO:0005739 mitochondrion Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0005516 calmodulin binding Molecular Function
KEGG gene cross-reference	ath:AT1G61560 dosa:Os06g0486300 osa:4341067 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.519

Rank 1 · TkA02G425400 · TK1151

Nucleus0.391

Rank 2 · TkA02G425400 · TK1151

Cell membrane0.089

Rank 3 · TkA02G425400 · TK1151

Golgi apparatus0.043

Rank 4 · TkA02G425400 · TK1151

Lysosome / Vacuole0.040

Rank 5 · TkA02G425400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT217-230 aa

PF13966zf-RVT297-310 aa

PF13966zf-RVT378-463 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G425400	`PF13966`	zf-RVT	217	230	9.4e-18	65.4
TkA02G425400	`PF13966`	zf-RVT	297	310	9.4e-18	65.4
TkA02G425400	`PF13966`	zf-RVT	378	463	9.4e-18	65.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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