TkA02G424260 | RubberDandelionOmics

Gene overview

TkA02G424260

Reference: TK1151 Chr: Chr02 Coordinates: 107773853-107776482 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2118 bp · TkA02G424260|TK1151|cDNA

TGAGTGCTTATAATACAAGTCTTTATAAGCTTTAAAATCGAGTGTCTTGCCTTCCAACATCGTTAATCCATCATCGGAGTAGCAGATTGCCTGACTAAGTTGGAGAAAAGCTTAGTGGCACACGAGGTAGTGACTGGTCTAAGAGTCAGCCCGTGACACTACGCCCTGAAGCGTAAGGTAAACGAAGCGCCAAATAGGCAAATACGACTTTCAAGAACATGAAGACCCCGGACTGTTTGATTGTATGGGTGGCATAACTG...

CDS

Download CDS FASTA

1617 bp · TkA02G424260|TK1151|CDS

ATGGAAGCTCTTAGAGCTCCCTCCCCGGTTTCTCCATCTTCACTGGTCAGAACACATTTGCCCAAACCCATTCTCAGTCTTTCATTTGCTCAGAAAACCCCCAATTCACCCTTACCCTCTCTAACCCAATTTACAAAATCCAAATTCAGGAACTTCACTGCTATTTCTCCATCCGTCTCAACGGAACCCACTTCCCCACCTGAAGAAGAACCCGAAACCCTTAATCAAGATGAAAAATTCGACTGGTTTTCTCAGTGGTA...

Protein

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538 aa · TkA02G424260|TK1151|PROTEIN

MEALRAPSPVSPSSLVRTHLPKPILSLSFAQKTPNSPLPSLTQFTKSKFRNFTAISPSVSTEPTSPPEEEPETLNQDEKFDWFSQWYALMPVCDLDKRAPHGKKVLGLDVVVWWDKNDNEWKVFNDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKLIPQAPPDGPPVNTFQKACVAVYPSTVQNGIVWFWPNSDPKYKDILTTKKPPYIPQLDDPSFTFQMYNRDIPYGYEILIENLMDPAHVPYAHYGIMRM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G424260`
TK1151 ID	TkA02G424260
OH-1004 ID	LXL04_014456
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 95.725 / OH-1004 93.084 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G424260

Location Chr02:107773853-107776482 (-)

Description Similar to PTC52: Protochlorophyllide-dependent translocon component 52, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25650`	Part of a translocon most abundantly expressed in etiolated plants and involved in the protochlorophyllide-dependent import of the precursor NADPH:protochlorophyllide oxidoreductase A (pPORA).	No verified direct reference in this release
`At3g44880`	Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0146400`	Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014456 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009812 flavonoid metabolic process Biological Process

GO:0009908 flower development Biological Process

GO:0010154 fruit development Biological Process

GO:0012501 programmed cell death Biological Process

GO:0015031 protein transport Biological Process

GO:0015996 chlorophyll catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G44880

ath:AT4G25650

osa:4331611

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.972

Rank 1 · TkA02G424260 · TK1151

Mitochondrion0.034

Rank 2 · TkA02G424260 · TK1151

Cytoplasm0.018

Rank 3 · TkA02G424260 · TK1151

Nucleus0.015

Rank 4 · TkA02G424260 · TK1151

Cell membrane0.014

Rank 5 · TkA02G424260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00355Rieske85-175 aa

PF19298KshA_C211-260 aa

PF19112VanA_C237-261 aa

PF08417PaO298-400 aa

PF19112VanA_C328-427 aa

PF19298KshA_C412-426 aa

PF08417PaO449-462 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G424260	`PF00355`	Rieske	85	175	4.4e-25	88.1
TkA02G424260	`PF19298`	KshA_C	211	260	0.11	13.3
TkA02G424260	`PF19112`	VanA_C	237	261	8.4e-07	30.0
TkA02G424260	`PF08417`	PaO	298	400	3.7e-24	85.4
TkA02G424260	`PF19112`	VanA_C	328	427	8.4e-07	30.0
TkA02G424260	`PF19298`	KshA_C	412	426	0.11	13.3
TkA02G424260	`PF08417`	PaO	449	462	3.7e-24	85.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W496`	Arabidopsis thaliana	sp\|Q8W496\|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic	61.000%	Swiss-Prot	High
`Q9FYC2`	Arabidopsis thaliana	sp\|Q9FYC2\|PAO_ARATH Pheophorbide a oxygenase, chloroplastic	34.200%	Swiss-Prot	Medium
`Q0DV66`	Oryza sativa subsp. japonica	sp\|Q0DV66\|PAO_ORYSJ Pheophorbide a oxygenase, chloroplastic	36.000%	Swiss-Prot	Medium

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