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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA02G417610
Reference: TK1151 Chr: Chr02 Coordinates: 106149410-106150852 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

1365 bp · TkA02G417610|TK1151|cDNA

ATGGCTTCAACACACCACCCTCATTTTGTATTGTTTCCCTTCATGGCCAAAGGCCACACGATACCATTGCTCCACCTAGCCCAGCTTCTCCTCCGCCGTGGCGTTACCCTCACCCTTTTCACCACCAAATCCAACCGACCCTTCGTCTCCCAGTTTCTCCACCGTCATGCAAATTCAATTTCTGTTATTGACCTTCCATTTCCAACCAATGTTGAAGGAATACCTCAAGGTACAGAGAGCACTGATAAGCTACCTTCAAT...

1365 bp · TkA02G417610|TK1151|CDS

ATGGCTTCAACACACCACCCTCATTTTGTATTGTTTCCCTTCATGGCCAAAGGCCACACGATACCATTGCTCCACCTAGCCCAGCTTCTCCTCCGCCGTGGCGTTACCCTCACCCTTTTCACCACCAAATCCAACCGACCCTTCGTCTCCCAGTTTCTCCACCGTCATGCAAATTCAATTTCTGTTATTGACCTTCCATTTCCAACCAATGTTGAAGGAATACCTCAAGGTACAGAGAGCACTGATAAGCTACCTTCAAT...

454 aa · TkA02G417610|TK1151|PROTEIN

MASTHHPHFVLFPFMAKGHTIPLLHLAQLLLRRGVTLTLFTTKSNRPFVSQFLHRHANSISVIDLPFPTNVEGIPQGTESTDKLPSMSLFWEFVSATKLMQSHFEQALNNLSDVTCIVSDGFLSWTLESANKLGIPRVSFFGMTGYSTAVALEVGVNRLLSGPESDSDDGLITVTNFPWIKVTRNDFDQPFNQPDPTGREVDCLMEIVVAIANSHGLIMNSFYELEPLFIDYLNREYSTFKAWCVGPLCLELSQGRSVLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G417610
TK1151 IDTkA02G417610
OH-1004 IDLXL04_014516
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G417610
LocationChr02:106149410-106150852 (-)
DescriptionSimilar to UGT90A1: UDP-glycosyltransferase 90A1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16890 UDP-glycosyltransferase 90A1. No verified direct reference in this release
At1g10400 UDP-glycosyltransferase 90A2. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014516 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016134 saponin metabolic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0035251 UDP-glucosyltransferase activity Molecular Function
KEGG gene cross-reference
ag:AFN26666
ag:AFN26667
ath:AT1G10400
ath:AT2G16890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.792
Rank 1 · TkA02G417610 · TK1151
Nucleus0.230
Rank 2 · TkA02G417610 · TK1151
Endoplasmic reticulum0.074
Rank 3 · TkA02G417610 · TK1151
Peroxisome0.054
Rank 4 · TkA02G417610 · TK1151
Cell membrane0.047
Rank 5 · TkA02G417610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168Glyco_transf_N10-150 aa
PF06722EryCIII-like_C128-140 aa
PF26168Glyco_transf_N211-248 aa
PF00201UDPGT255-411 aa
PF21228RuBisCO_activase_AAA_helical329-349 aa
PF06722EryCIII-like_C331-373 aa
PF26168Glyco_transf_N351-367 aa
PF21228RuBisCO_activase_AAA_helical378-412 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G417610PF26168Glyco_transf_N101501.5e-0835.6
TkA02G417610PF06722EryCIII-like_C1281400.1412.9
TkA02G417610PF26168Glyco_transf_N2112481.5e-0835.6
TkA02G417610PF00201UDPGT2554119.4e-2071.6
TkA02G417610PF21228RuBisCO_activase_AAA_helical3293490.1513.1
TkA02G417610PF06722EryCIII-like_C3313730.1412.9
TkA02G417610PF26168Glyco_transf_N3513671.5e-0835.6
TkA02G417610PF21228RuBisCO_activase_AAA_helical3784120.1513.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZVX4Arabidopsis thalianasp|Q9ZVX4|U90A1_ARATH UDP-glycosyltransferase 90A153.400%Swiss-ProtHigh
Q9SY84Arabidopsis thalianasp|Q9SY84|U90A2_ARATH UDP-glycosyltransferase 90A247.000%Swiss-ProtMedium

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