TkA02G413510 | RubberDandelionOmics

Gene overview

TkA02G413510

Reference: TK1151 Chr: Chr02 Coordinates: 105179894-105182621 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1233 bp · TkA02G413510|TK1151|cDNA

GTTAAAACCCTCGAATAATCTTTTCCCCATAATTTCTCTTTCTCTCTCTCTCAAACTCAAACGGCTTCTTCCCTCTTCCTCCAACCAACAACCGAGAACCATCGTTCTCTCGCACTCAAATGATGAGTCTCAGAGCATAAAATCAGTTGTGGGCGATTAGAAAGTTAGAATTAAAGATGGGAAAGTACATACAGAGGAACTCAAAGACTACCATGGATATACCTTCTCACGGCGGCGTCCGTACCCGGGCCAGAACACTA...

CDS

Download CDS FASTA

672 bp · TkA02G413510|TK1151|CDS

ATGGGAAAGTACATACAGAGGAACTCAAAGACTACCATGGATATACCTTCTCACGGCGGCGTCCGTACCCGGGCCAGAACACTAGCACTTCAGAAAGCTTCCTCCGCCGTTTCGCCGGGTTCTTGTTCCTACATTCAACTCCGTAGCCGTCGTCTAGTCAAGCCAACTCCCCCAAACATACAGAAGGAGAACCGTCTTCCGCCAAAACCGAATAAACATTCTTGCAAAGGAGCCGGTTCGTCGACGCTGAAGGTTAATTC...

Protein

Download Protein FASTA

223 aa · TkA02G413510|TK1151|PROTEIN

MGKYIQRNSKTTMDIPSHGGVRTRARTLALQKASSAVSPGSCSYIQLRSRRLVKPTPPNIQKENRLPPKPNKHSCKGAGSSTLKVNSGKSSQSVKKLVDRKDEIHQNTEIKDAEDVGINDETSFGENMLEIEGRERSIRETTPCSLIRDPDTIISTPSSSTKRTYSANSNYRPQRLIPSTVEMEEFFIEPEKQQQKLFIDKYNFDPVSEKPVPGRYEWVKMDN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G413510`
TK1151 ID	TkA02G413510
OH-1004 ID	LXL04_014551
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G413510

Location Chr02:105179894-105182621 (-)

Description Similar to KRP3: Cyclin-dependent kinase inhibitor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48820`	Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity.	No verified direct reference in this release
`At2g32710`	Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity.	No verified direct reference in this release
`At3g24810`	Inhibits CYCD2-1/CDKA-1 complex kinase activity without interaction with the complex.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0471700`	Cyclin-dependent kinase inhibitor 4.	No verified direct reference in this release
`Os03g0137800`	Cyclin-dependent kinase inhibitor 5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014551 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0045740 positive regulation of DNA replication Biological Process

GO:0045786 negative regulation of cell cycle Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity Molecular Function

GO:0031490 chromatin DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G32710

ath:AT3G24810

ath:AT5G48820

dosa:Os03g0137800

dosa:Os10g0471700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.937

Rank 1 · TkA02G413510 · TK1151

Cytoplasm0.151

Rank 2 · TkA02G413510 · TK1151

Cell membrane0.028

Rank 3 · TkA02G413510 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA02G413510 · TK1151

Mitochondrion0.012

Rank 5 · TkA02G413510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02234CDI177-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G413510	`PF02234`	CDI	177	220	2.2e-16	60.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKB5`	Arabidopsis thaliana	sp\|Q9FKB5\|KRP3_ARATH Cyclin-dependent kinase inhibitor 3	40.700%	Swiss-Prot	Medium
`Q8GYJ3`	Arabidopsis thaliana	sp\|Q8GYJ3\|KRP4_ARATH Cyclin-dependent kinase inhibitor 4	48.300%	Swiss-Prot	Low
`Q9LRY0`	Arabidopsis thaliana	sp\|Q9LRY0\|KRP5_ARATH Cyclin-dependent kinase inhibitor 5	37.000%	Swiss-Prot	Medium
`Q7XDH8`	Oryza sativa subsp. japonica	sp\|Q7XDH8\|KRP4_ORYSJ Cyclin-dependent kinase inhibitor 4	42.300%	Swiss-Prot	Medium
`Q283L0`	Oryza sativa subsp. japonica	sp\|Q283L0\|KRP5_ORYSJ Cyclin-dependent kinase inhibitor 5	34.600%	Swiss-Prot	Medium

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