TkA02G409350 | RubberDandelionOmics

Gene overview

TkA02G409350

Reference: TK1151 Chr: Chr02 Coordinates: 104117295-104118122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

439 bp · TkA02G409350|TK1151|cDNA

AACTCAGGCTCAGACCCAGGCTGAGTTCGTGACTCGACCACTTTTTCCGATGAATCAGGGCGGAGGAAGTTTCAATCAAGGGCAGCCGATGAATTCGTTGATGTTATTCCCTAATAATATACCGGTACAACACCAGAAGCCGATTGTACAACAAAATCAAGTGGCGAAGAAGAGTAGGAGGGGACCTAGGTCTAGAAGCTCACAGTATAGAGGAGTTACCTTCTATAGAAGAACTGGTAGATGGGAATCACATATCTGGG...

CDS

Download CDS FASTA

390 bp · TkA02G409350|TK1151|CDS

ATGAATCAGGGCGGAGGAAGTTTCAATCAAGGGCAGCCGATGAATTCGTTGATGTTATTCCCTAATAATATACCGGTACAACACCAGAAGCCGATTGTACAACAAAATCAAGTGGCGAAGAAGAGTAGGAGGGGACCTAGGTCTAGAAGCTCACAGTATAGAGGAGTTACCTTCTATAGAAGAACTGGTAGATGGGAATCACATATCTGGGACTGCGGGAAACAAATCTATTTAGGTGGATTCGACACTGCTCATTCTGC...

Protein

Download Protein FASTA

130 aa · TkA02G409350|TK1151|PROTEIN

MNQGGGSFNQGQPMNSLMLFPNNIPVQHQKPIVQQNQVAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQIYLGGFDTAHSAARAYDRAAIKFRVVDADINFNLSDYEDDMNQQIGNLSKEEFVH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G409350`
TK1151 ID	TkA02G409350
OH-1004 ID	LXL04_017705
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 31.773 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G409350

Location Chr02:104117295-104118122 (+)

Description Similar to AP2-2: APETALA2-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36920`	Probable transcriptional activator that promotes early floral meristem identity.	No verified direct reference in this release
`At2g28550`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8AXC3`	Probable transcription factor (By similarity).	No verified direct reference in this release
`UniProt: B8AMA9`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os03g0818800`	Probable transcription factor (By similarity).	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04804.x OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.2016 · DOI: 10.3389/fpls.2016.01891

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017705 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0080050 regulation of seed development Biological Process

GO:1905392 plant organ morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0001222 transcription corepressor binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G28550

osa:4334582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.926

Rank 1 · TkA02G409350 · TK1151

Cytoplasm0.138

Rank 2 · TkA02G409350 · TK1151

Cell membrane0.024

Rank 3 · TkA02G409350 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA02G409350 · TK1151

Plastid0.019

Rank 5 · TkA02G409350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP252-98 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G409350	`PF00847`	AP2	52	98	3.7e-10	40.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P47927`	Arabidopsis thaliana	sp\|P47927\|AP2_ARATH Floral homeotic protein APETALA 2	80.800%	Swiss-Prot	High
`Q9SK03`	Arabidopsis thaliana	sp\|Q9SK03\|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7	89.000%	Swiss-Prot	High
`B8AXC3`	Oryza sativa subsp. indica	sp\|B8AXC3\|AP21_ORYSI APETALA2-like protein 1	89.100%	Swiss-Prot	High
`B8AMA9`	Oryza sativa subsp. indica	sp\|B8AMA9\|AP22_ORYSI APETALA2-like protein 2	81.800%	Swiss-Prot	High
`Q84TB5`	Oryza sativa subsp. japonica	sp\|Q84TB5\|AP22_ORYSJ APETALA2-like protein 2	81.800%	Swiss-Prot	High

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