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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G408980
Reference: TK1151 Chr: Chr02 Coordinates: 104040486-104048310 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

2469 bp · TkA02G408980|TK1151|CDS

ATGGCCTCTCAACCGCCGAAGAAGAAACAGAGAAAGAGGAATATAATCAGAGAGAGCACGGGACAACTAGAGCGATTCGACTCACTCCCATGGACCTCATCTCTTCCCGGTGCCGACGACGACCCGTTCTCTGCATTCGCCGGAATAAATGACTTTGAAGGAGGTGTTTTGTCTCTTGAAGAGATTGATGATTCAGAGTACAAATTGGAGCTTCCCAAAGGTTTTCAAAAGGGAGGGAAAAAACCGGAAAAACCGACAAA...

Protein

Download Protein FASTA

822 aa · TkA02G408980|TK1151|PROTEIN

MASQPPKKKQRKRNIIRESTGQLERFDSLPWTSSLPGADDDPFSAFAGINDFEGGVLSLEEIDDSEYKLELPKGFQKGGKKPEKPTKRKREETNSDEAINKDLKNNETEKEVNTGETGKDAEKKKKKKKKKKKKKDKTAKESTDNKQETDNKEETDSKEESVTIAETNDQIEEEEDKVDDSEYHAWYELRLHPLLMKSISNLKFTEPTPIQKACIPAGAHQGKDVIGAAETGSGKTLAFGLPILQRLLEERDKSERQLEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G408980
TK1151 IDTkA02G408980
OH-1004 IDLXL04_014601
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G408980
LocationChr02:104040486-104048310 (+)
DescriptionSimilar to Os04g0510400: DEAD-box ATP-dependent RNA helicase 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g16840 DEAD-box ATP-dependent RNA helicase 13. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XVF7 DEAD-box ATP-dependent RNA helicase 13. No verified direct reference in this release
Os04g0510400 DEAD-box ATP-dependent RNA helicase 13. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014601 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0009409 response to cold Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003724 RNA helicase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT3G16840
cnb:CNBL0260
ddi:DDB_G0281841
dosa:Os04g0510400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.950
Rank 1 · TkA02G408980 · TK1151
Cytoplasm0.103
Rank 2 · TkA02G408980 · TK1151
Mitochondrion0.020
Rank 3 · TkA02G408980 · TK1151
Cell membrane0.017
Rank 4 · TkA02G408980 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA02G408980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22590Cas3-like_C_2128-136 aa
PF04851ResIII131-156 aa
PF00102Y_phosphatase139-192 aa
PF00270DEAD208-413 aa
PF04851ResIII220-377 aa
PF13401AAA_22229-376 aa
PF00271Helicase_C275-321 aa
PF00271Helicase_C399-422 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G408980PF22590Cas3-like_C_21281360.01316.5
TkA02G408980PF04851ResIII1311560.0001122.8
TkA02G408980PF00102Y_phosphatase1391920.1912.1
TkA02G408980PF00270DEAD2084134.9e-41141.0
TkA02G408980PF04851ResIII2203770.0001122.8
TkA02G408980PF13401AAA_222293760.03515.1
TkA02G408980PF00271Helicase_C2753213.2e-31108.5
TkA02G408980PF00271Helicase_C3994223.2e-31108.5
TkA02G408980PF00271Helicase_C4795863.2e-31108.5
TkA02G408980PF00102Y_phosphatase4825280.1912.1
TkA02G408980PF04851ResIII4835170.0001122.8
TkA02G408980PF13307Helicase_C_24895700.00119.8
TkA02G408980PF06862Utp25_C4925770.007516.6
TkA02G408980PF22590Cas3-like_C_24935850.01316.5
TkA02G408980PF13401AAA_226737240.03515.1
TkA02G408980PF04851ResIII7257600.0001122.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93Y39Arabidopsis thalianasp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 1357.800%Swiss-ProtHigh
A2XVF7Oryza sativa subsp. indicasp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 1362.000%Swiss-ProtHigh
A3AVH5Oryza sativa subsp. japonicasp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 1362.000%Swiss-ProtHigh

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