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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G408920
Reference: TK1151 Chr: Chr02 Coordinates: 104019498-104021164 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1247 bp · TkA02G408920|TK1151|cDNA

TGGATATCATCCGTCCACGTCACTATAGATGGCTAAAAAGCCATGGCATTGTCTTTTAGGTCAGCTTTCATCAATCGGAGAAAACAACCACCAAATTGACCAGCTACCACCACCGGATCAGGCAACATGGCTGCTGCGACCGCCACTGCTGCCGCTGCCATCGGCTCTCCATTCTCCAAATGTAACATAAAATCAAAGTCAGGGCCTTCTGATCCTATGTTTCTTAGATTAACATCTACAGTACCCAGGCTACAGACATC...

CDS

Download CDS FASTA

867 bp · TkA02G408920|TK1151|CDS

ATGGCTGCTGCGACCGCCACTGCTGCCGCTGCCATCGGCTCTCCATTCTCCAAATGTAACATAAAATCAAAGTCAGGGCCTTCTGATCCTATGTTTCTTAGATTAACATCTACAGTACCCAGGCTACAGACATCGTCATTAGCTCACTCTCTTACAAGAACCGAACCAATACCCATCTCCGGCAAGTGGCGGGTGCTAAAGGTATCGGCTTCGGTGGCACAAGAAGAGGCGGCAGTCTCGGTGACGGAGGAAGAAACCCC...

Protein

Download Protein FASTA

288 aa · TkA02G408920|TK1151|PROTEIN

MAAATATAAAAIGSPFSKCNIKSKSGPSDPMFLRLTSTVPRLQTSSLAHSLTRTEPIPISGKWRVLKVSASVAQEEAAVSVTEEETPAQQEDVVATEEVTSGDGGDQAESISSVHTKLYFGNLPYLCDSAQLAGIIQDYASPELVEVLYDRDSGKSRGFAFVTMSSIEDCKAVIENLDGREYGGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTEKFSEHGNVVGARVLYDGETGRSRGYGFVSYSTKSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G408920
TK1151 IDTkA02G408920
OH-1004 IDLXL04_014605
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G408920
LocationChr02:104019498-104021164 (+)
DescriptionSimilar to 29 kDa ribonucleoprotein A, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37220 Could be involved in splicing and/or processing of chloroplast RNA's. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014605 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0045087 innate immune response Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008266 poly(U) RNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G50250
nsy:104230409
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.976
Rank 1 · TkA02G408920 · TK1151
Nucleus0.030
Rank 2 · TkA02G408920 · TK1151
Mitochondrion0.027
Rank 3 · TkA02G408920 · TK1151
Cytoplasm0.018
Rank 4 · TkA02G408920 · TK1151
Cell membrane0.012
Rank 5 · TkA02G408920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00054Laminin_G_160-128 aa
PF26250RRM_RdRP1_2111-121 aa
PF00076RRM_1118-188 aa
PF30126YHR127W_C122-192 aa
PF26250RRM_RdRP1_2145-172 aa
PF29575Fz_Smo_sans_CRD_N150-165 aa
PF16367RRM_7153-176 aa
PF29326RRM_MUD2_C158-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G408920PF00054Laminin_G_1601280.05514.4
TkA02G408920PF26250RRM_RdRP1_21111210.1513.3
TkA02G408920PF00076RRM_11181884.2e-36123.4
TkA02G408920PF30126YHR127W_C1221920.001419.3
TkA02G408920PF26250RRM_RdRP1_21451720.1513.3
TkA02G408920PF29575Fz_Smo_sans_CRD_N1501651.29.5
TkA02G408920PF16367RRM_71531760.007616.9
TkA02G408920PF29326RRM_MUD2_C1581920.04814.5
TkA02G408920PF03880DbpA1681900.1712.7
TkA02G408920PF00054Laminin_G_11962180.05514.4
TkA02G408920PF16367RRM_72082620.007616.9
TkA02G408920PF00076RRM_12092784.2e-36123.4
TkA02G408920PF30126YHR127W_C2092830.001419.3
TkA02G408920PF26250RRM_RdRP1_22412650.1513.3
TkA02G408920PF29575Fz_Smo_sans_CRD_N2462561.29.5
TkA02G408920PF29326RRM_MUD2_C2492820.04814.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUU4Arabidopsis thalianasp|Q9ZUU4|CP29B_ARATH RNA-binding protein CP29B, chloroplastic41.000%Swiss-ProtMedium

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