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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G408700
Reference: TK1151 Chr: Chr02 Coordinates: 103961947-103962450 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

504 bp · TkA02G408700|TK1151|cDNA

ATGATTCAAGATTTCTTGATTCCTCCCGGGATAGAACATTACGGGTGTATGGTGGATTTGTTATGCAAAGCCGGAATGTTGGAAGATGCAATGGAATTGATAAAGGGAATGGAATTGGAACCGAACGGTGTGATTTGGGGTGCGGTTTTGAACGGGTGTAGGATTCAGAAGAATTTGGATTTGGGTCGGGTTGCTGTTGAGAAATTGATGGTTTTGGAACCGGATAATAGTGGGTATTATAGTCTTTTTGTTAATATGTT...

CDS

Download CDS FASTA

504 bp · TkA02G408700|TK1151|CDS

ATGATTCAAGATTTCTTGATTCCTCCCGGGATAGAACATTACGGGTGTATGGTGGATTTGTTATGCAAAGCCGGAATGTTGGAAGATGCAATGGAATTGATAAAGGGAATGGAATTGGAACCGAACGGTGTGATTTGGGGTGCGGTTTTGAACGGGTGTAGGATTCAGAAGAATTTGGATTTGGGTCGGGTTGCTGTTGAGAAATTGATGGTTTTGGAACCGGATAATAGTGGGTATTATAGTCTTTTTGTTAATATGTT...

Protein

Download Protein FASTA

167 aa · TkA02G408700|TK1151|PROTEIN

MIQDFLIPPGIEHYGCMVDLLCKAGMLEDAMELIKGMELEPNGVIWGAVLNGCRIQKNLDLGRVAVEKLMVLEPDNSGYYSLFVNMLAEENRWSEVARIRSSMKEFRVEKKSPGSSWIEIEGKLHQFSASDKYHECSKEIYLLVDRLYGKQLLDACVFEYDEYISFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G408700
TK1151 IDTkA02G408700
OH-1004 IDLXL04_014608
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 26.806
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G408700
LocationChr02:103961947-103962450 (+)
DescriptionSimilar to EMB1444: Pentatricopeptide repeat-containing protein At1g06143
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g06143 Pentatricopeptide repeat-containing protein At1g06143. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G06143
ath:AT2G20540
ath:AT3G29230
ath:AT5G48910
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.465
Rank 1 · TkA02G408700 · TK1151
Plastid0.241
Rank 2 · TkA02G408700 · TK1151
Nucleus0.138
Rank 3 · TkA02G408700 · TK1151
Cytoplasm0.074
Rank 4 · TkA02G408700 · TK1151
Peroxisome0.014
Rank 5 · TkA02G408700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_210-38 aa
PF12854PPR_112-38 aa
PF01535PPR13-38 aa
PF12854PPR_138-52 aa
PF13041PPR_241-56 aa
PF01535PPR44-58 aa
PF20431E_motif58-119 aa
PF11434CHIPS66-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G408700PF13041PPR_210380.0002821.6
TkA02G408700PF12854PPR_112385e-0626.9
TkA02G408700PF01535PPR13387.1e-0729.8
TkA02G408700PF12854PPR_138525e-0626.9
TkA02G408700PF13041PPR_241560.0002821.6
TkA02G408700PF01535PPR44587.1e-0729.8
TkA02G408700PF20431E_motif581198.2e-1658.7
TkA02G408700PF11434CHIPS661170.2112.2
TkA02G408700PF01535PPR801077.1e-0729.8
TkA02G408700PF13041PPR_2801070.0002821.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q56X05Arabidopsis thalianasp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g0614353.500%Swiss-ProtHigh
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207046.500%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275044.200%Swiss-ProtMedium
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360045.600%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial42.200%Swiss-ProtMedium

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