TkA02G404350 | RubberDandelionOmics

Gene overview

TkA02G404350

Reference: TK1151 Chr: Chr02 Coordinates: 102725025-102729846 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2821 bp · TkA02G404350|TK1151|cDNA

GAGATATCACTTTGCTTCTAAATCTAATTTGGCAGAGAAAAAATAAGCCTTTGTTGATTTAACAATTGCGGAACCACTTTACCCATCTCTCTCTCTCTCTCACACTCACTGACTCACTCACTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACTGTGAGAACAAAAGAACGAAAAAGATTCGCAGAAGCGGAACGCAAGAAAGAAAACACCACATTCAGACCCGGTTCAATAACGTCTCACCAACCCTCTCT...

CDS

Download CDS FASTA

1869 bp · TkA02G404350|TK1151|CDS

ATGGGTTATCTACTAAAAGAAGCATTGAAAACCCTATGCGGTGTGAACCAGTGGTCTTATGCTATTTTCTGGAAGATCGGCTGCCAAAACCCTAAGCTTCTAATATGGGAAGAATGTTATTATGAACCTGTTGTATATTCAAATGTTGGACATGGAGGGAATAAAGTCCACTTTCTTGTAAACAAAATGATGAAGGACAACTACATCATTCTTTTAGGAGAAGGATTGGTTGGGAGGGTTGCATTCACTCGAAATCATCA...

Protein

Download Protein FASTA

622 aa · TkA02G404350|TK1151|PROTEIN

MGYLLKEALKTLCGVNQWSYAIFWKIGCQNPKLLIWEECYYEPVVYSNVGHGGNKVHFLVNKMMKDNYIILLGEGLVGRVAFTRNHQWIISNNKLPGVHPPEVSNEVYTQFSAGIQTIAVIPVHPHGVVQLGSLSTIMENVSFVNDVKGLISQLGCVPGALLSENFTKSEVGPTLSSGSSGHTTSFSLNRNTGNNQVVNGLTSQQISHPKNNQEIGFGSFLEQCITPNTFSGDRINANNPPSLPAGKQLIEPKGKVEHEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G404350`
TK1151 ID	TkA02G404350
OH-1004 ID	LXL04_014700
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.300
Protein coverage (%)	TK1151 99.839 / OH-1004 93.145 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G404350

Location Chr02:102725025-102729846 (-)

Description Similar to LHW: Transcription factor LHW

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27230`	Transcription activator that regulates root development; promotes the production of stele cells in roots.	No verified direct reference in this release
`At1g64625`	Transcription factor that may regulate root development.	No verified direct reference in this release
`At2g31280`	Transcription factor that may regulate root development.	No verified direct reference in this release
`At1g06150`	Transcription factor that may regulate root development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014700 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007140 male meiotic nuclear division Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010089 xylem development Biological Process

GO:0010479 stele development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048316 seed development Biological Process

GO:0048364 root development Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0090058 metaxylem development Biological Process

KEGG gene cross-reference

ath:AT1G06150

ath:AT1G64625

ath:AT2G27230

ath:AT2G31280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.936

Rank 1 · TkA02G404350 · TK1151

Cytoplasm0.128

Rank 2 · TkA02G404350 · TK1151

Cell membrane0.038

Rank 3 · TkA02G404350 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA02G404350 · TK1151

Plastid0.015

Rank 5 · TkA02G404350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14215bHLH-MYC_N5-42 aa

PF14215bHLH-MYC_N59-149 aa

PF10573UPF0561392-440 aa

PF23176bHLH_LHW423-483 aa

PF00010HLH429-466 aa

PF22754bHLH-TF_ACT-like_plant524-556 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G404350	`PF14215`	bHLH-MYC_N	5	42	8e-34	118.2
TkA02G404350	`PF14215`	bHLH-MYC_N	59	149	8e-34	118.2
TkA02G404350	`PF10573`	UPF0561	392	440	0.077	13.9
TkA02G404350	`PF23176`	bHLH_LHW	423	483	2.3e-32	111.5
TkA02G404350	`PF00010`	HLH	429	466	0.32	11.6
TkA02G404350	`PF22754`	bHLH-TF_ACT-like_plant	524	556	0.053	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XIN0`	Arabidopsis thaliana	sp\|Q9XIN0\|LHW_ARATH Transcription factor LHW	48.400%	Swiss-Prot	Medium
`Q7XJU0`	Arabidopsis thaliana	sp\|Q7XJU0\|LHWL2_ARATH Transcription factor bHLH157	32.300%	Swiss-Prot	Medium
`Q58G01`	Arabidopsis thaliana	sp\|Q58G01\|LHWL3_ARATH Transcription factor bHLH155	30.800%	Swiss-Prot	Medium
`P0C7P8`	Arabidopsis thaliana	sp\|P0C7P8\|LHWL1_ARATH Transcription factor EMB1444	54.500%	Swiss-Prot	Low

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