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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G402270
Reference: TK1151 Chr: Chr02 Coordinates: 102150814-102158150 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3039 bp · TkA02G402270|TK1151|cDNA

CTCGAATCACGGGTTGAAGTTAAGTCTCCCATTAAAGACCAAATGCCGCTATTACCTAATCCAACGTTTCTCGACAGAAACTCAAGAGAGAGAAGAAGGGTAACGGAGCTTTGCTTTTGTTGCTTTTTTTGTGGGTTTTTTTTTCATCGTCTCCATCTTCGCCTTCACCTGCACCATCTCCTCAATCTGAAACTTAAATATGAGATCTTGGCTTATAACCTTAGCACGGTAGTTGGGTTTTCGATCTGGGTTCGACTCAT...

CDS

Download CDS FASTA

2475 bp · TkA02G402270|TK1151|CDS

ATGTCTGCTTCATTGGCGACATTCACGCGTCCCCGAATTGGAGCGACAACTACGGTTTTCAAGAGTGGGCCGCTGTTCATATCTTCAAAAGGGTTAGGTTGGAAGTCATGGAAGAAGCGTTGGTTTATTCTCACACGGACTTCTCTGGTGTTTTTTAAAAATGATCCAAGTGCACTTCCTCAGAGAGGAAGTGAAGTGAATCTGACATTGGGGGGAATTGACTTGAACAATTCAGGAAGTGTTGTTGTTAGAGAGGATAA...

Protein

Download Protein FASTA

824 aa · TkA02G402270|TK1151|PROTEIN

MSASLATFTRPRIGATTTVFKSGPLFISSKGLGWKSWKKRWFILTRTSLVFFKNDPSALPQRGSEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEHALSQAPNAALVMGQNGIFRNDTTDSTEGSFYQWSNKRPIKSLVVGRPILLALEDIDGGPSFLEKALRFLEKHGSKVEGILRQAADVEEVDRRVQEYETGKTEFNSDEDAHVIGDCVKHVLRELPSSPVPASCCTALLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G402270
TK1151 IDTkA02G402270
OH-1004 IDLXL04_014725
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G402270
LocationChr02:102150814-102158150 (-)
DescriptionSimilar to ROPGAP7: Rho GTPase-activating protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19390 Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. No verified direct reference in this release
At5g12150 Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. No verified direct reference in this release
At4g24580 Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.
A tip-localized RhoGAP controls cell polarity by globally inhibiting Rho GTPase at the cell apex.2008 · DOI: 10.1016/j.cub.2008.11.057

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014725 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0009846 pollen germination Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0009865 pollen tube adhesion Biological Process
GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process
GO:0030154 cell differentiation Biological Process
GO:0035021 negative regulation of Rac protein signal transduction Biological Process
GO:0035024 negative regulation of Rho protein signal transduction Biological Process
GO:0043547 positive regulation of GTPase activity Biological Process
GO:0048868 pollen tube development Biological Process
GO:0090630 activation of GTPase activity Biological Process
GO:1900028 negative regulation of ruffle assembly Biological Process
KEGG gene cross-reference
ath:AT4G24580
ath:AT5G12150
ath:AT5G19390
hsa:83478
mmu:231532
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.457
Rank 1 · TkA02G402270 · TK1151
Cell membrane0.392
Rank 2 · TkA02G402270 · TK1151
Nucleus0.286
Rank 3 · TkA02G402270 · TK1151
Golgi apparatus0.067
Rank 4 · TkA02G402270 · TK1151
Lysosome / Vacuole0.056
Rank 5 · TkA02G402270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20399PH_2018-55 aa
PF00169PH20-124 aa
PF15413PH_1135-121 aa
PF20399PH_20113-149 aa
PF14389Lzipper-MIP1114-131 aa
PF00620RhoGAP181-325 aa
PF09720Unstab_antitox206-230 aa
PF14389Lzipper-MIP1287-307 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G402270PF20399PH_2018550.1412.9
TkA02G402270PF00169PH201243.9e-1247.3
TkA02G402270PF15413PH_11351210.005617.8
TkA02G402270PF20399PH_201131490.1412.9
TkA02G402270PF14389Lzipper-MIP11141313.1e-2176.2
TkA02G402270PF00620RhoGAP1813255.4e-33114.7
TkA02G402270PF09720Unstab_antitox2062300.1213.1
TkA02G402270PF14389Lzipper-MIP12873073.1e-2176.2
TkA02G402270PF07361Cytochrom_B5623443580.8111.0
TkA02G402270PF13334DUF40945275970.4111.8
TkA02G402270PF14389Lzipper-MIP15435673.1e-2176.2
TkA02G402270PF09720Unstab_antitox5675760.1213.1
TkA02G402270PF14389Lzipper-MIP15746543.1e-2176.2
TkA02G402270PF13334DUF40946176560.4111.8
TkA02G402270PF07361Cytochrom_B5626276880.8111.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWQ4Arabidopsis thalianasp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 763.200%Swiss-ProtHigh
Q9FMP8Arabidopsis thalianasp|Q9FMP8|RGAP6_ARATH Rho GTPase-activating protein 660.200%Swiss-ProtHigh
F4JQZ3Arabidopsis thalianasp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN148.900%Swiss-ProtMedium

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