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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G398910
Reference: TK1151 Chr: Chr02 Coordinates: 101339306-101341363 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2058 bp · TkA02G398910|TK1151|cDNA

GGAACCAATGCCAGGACCTTAACCAACACGATCTTCACCTATCTCAAACTTAACGACCTCTCCAAAGCAGTTTCCACGTTGTATAAATCTACAGTCCCCTTCGACTTCTCTCTGTACGCATCCATCTTTAATCAATGTGCTTCCAGACGTGCCATCGTCGAAGCTCGTAAAGTCGAATCTCATTTAATTACCTACAACCGGACACCACCCATTTTCTTATTGAACAGGGCAATTGAGGTTTATGGGAAATGCGGGTGCTT...

CDS

Download CDS FASTA

2058 bp · TkA02G398910|TK1151|CDS

GGAACCAATGCCAGGACCTTAACCAACACGATCTTCACCTATCTCAAACTTAACGACCTCTCCAAAGCAGTTTCCACGTTGTATAAATCTACAGTCCCCTTCGACTTCTCTCTGTACGCATCCATCTTTAATCAATGTGCTTCCAGACGTGCCATCGTCGAAGCTCGTAAAGTCGAATCTCATTTAATTACCTACAACCGGACACCACCCATTTTCTTATTGAACAGGGCAATTGAGGTTTATGGGAAATGCGGGTGCTT...

Protein

Download Protein FASTA

685 aa · TkA02G398910|TK1151|PROTEIN

GTNARTLTNTIFTYLKLNDLSKAVSTLYKSTVPFDFSLYASIFNQCASRRAIVEARKVESHLITYNRTPPIFLLNRAIEVYGKCGCLRDAVELFDEMPERDGGSWNALISAYTRNGLAHEALELFVDMKKDGFQWNEISFANAVGCCGSLLEISFGKGIHGLVVKYGFSTNVIIASSIIDVYGKCRFLSDAKRMFDELRDPNEVSWNVIIRRHYDMGKEKEAILLFFEMVRRNDVTPLSHTISNVLRACSKISALNEALQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G398910
TK1151 IDTkA02G398910
OH-1004 IDLXL04_014766
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 99.854
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G398910
LocationChr02:101339306-101341363 (-)
DescriptionSimilar to PCMP-A5: Pentatricopeptide repeat-containing protein At3g26540
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g26540 Pentatricopeptide repeat-containing protein At3g26540. No verified direct reference in this release
At3g53360 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial. No verified direct reference in this release
At5g16860 Pentatricopeptide repeat-containing protein At5g16860. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014766 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010449 root meristem growth Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G26540
ath:AT3G53360
ath:AT5G16860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.622
Rank 1 · TkA02G398910 · TK1151
Plastid0.198
Rank 2 · TkA02G398910 · TK1151
Nucleus0.048
Rank 3 · TkA02G398910 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G398910 · TK1151
Cell membrane0.006
Rank 5 · TkA02G398910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_29-25 aa
PF14559TPR_1912-27 aa
PF07719TPR_213-24 aa
PF01535PPR14-27 aa
PF23276TPR_2432-96 aa
PF18726HEPN_SAV_610735-55 aa
PF13041PPR_273-100 aa
PF01535PPR78-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G398910PF13041PPR_29251.2e-67224.5
TkA02G398910PF14559TPR_1912270.01616.2
TkA02G398910PF07719TPR_213241.89.6
TkA02G398910PF01535PPR14275.6e-73236.9
TkA02G398910PF23276TPR_2432962.6e-1144.3
TkA02G398910PF18726HEPN_SAV_610735550.2712.5
TkA02G398910PF13041PPR_2731001.2e-67224.5
TkA02G398910PF01535PPR781005.6e-73236.9
TkA02G398910PF12854PPR_178975.4e-35119.5
TkA02G398910PF13812PPR_378991.3e-1867.5
TkA02G398910PF07719TPR_281961.89.6
TkA02G398910PF03704BTAD871290.3212.0
TkA02G398910PF14559TPR_19881030.01616.2
TkA02G398910PF13812PPR_31021481.3e-1867.5
TkA02G398910PF29070MSC6_N1031424.6e-0626.7
TkA02G398910PF10366Vps39_11031300.1313.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRV2Arabidopsis thalianasp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g2654048.500%Swiss-ProtMedium
Q9LFI1Arabidopsis thalianasp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial27.400%Swiss-ProtLow
Q9LFL5Arabidopsis thalianasp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g1686028.900%Swiss-ProtLow
Q9SS60Arabidopsis thalianasp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g0358025.500%Swiss-ProtLow
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial25.100%Swiss-ProtLow

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