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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G398900
Reference: TK1151 Chr: Chr02 Coordinates: 101337904-101338905 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

765 bp · TkA02G398900|TK1151|cDNA

ATGTATGTAAAATCCGGCGACCTCGAAACCGCCCGCTTGATTTTCAACACCATGGAACAAAAAAACACTGTGTCATGGACCTCGTTAATGACCGGGTACGGAATGCATGGGTGCGGTGACCAAGCTCTAGAACTCTTCACCGGAATGAAAGATTCCGATTCCGATTCCGGACTCGAGATTGACGGTGTCACATTTATAGTCATCCTCTATGCATGTAGCCATTCCGGTTTAGTGAACCAAGGTTGTGAAAATGATGGGAC...

CDS

Download CDS FASTA

765 bp · TkA02G398900|TK1151|CDS

ATGTATGTAAAATCCGGCGACCTCGAAACCGCCCGCTTGATTTTCAACACCATGGAACAAAAAAACACTGTGTCATGGACCTCGTTAATGACCGGGTACGGAATGCATGGGTGCGGTGACCAAGCTCTAGAACTCTTCACCGGAATGAAAGATTCCGATTCCGATTCCGGACTCGAGATTGACGGTGTCACATTTATAGTCATCCTCTATGCATGTAGCCATTCCGGTTTAGTGAACCAAGGTTGTGAAAATGATGGGAC...

Protein

Download Protein FASTA

254 aa · TkA02G398900|TK1151|PROTEIN

MYVKSGDLETARLIFNTMEQKNTVSWTSLMTGYGMHGCGDQALELFTGMKDSDSDSGLEIDGVTFIVILYACSHSGLVNQGCENDGTYTLLSNIYANTKRWKDVSKIRYLMKDSGIRKRPGWSCVQGKTGVVTFYVGDKDHPRSDEIYGVLGELIDGIKGLGYVPDTSFALHDVDDEEKSDLLVEHSEKLALAYGVLTTSLGQPIRITKNLRVCGDCHVAMVYISKIIEHEIILRDASRFHHFKNGSCSCKGYW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G398900
TK1151 IDTkA02G398900
OH-1004 IDLXL04_014767
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)76.300
Protein coverage (%)TK1151 100.000 / OH-1004 38.856
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G398900
LocationChr02:101337904-101338905 (+)
DescriptionSimilar to PCMP-H92: Pentatricopeptide repeat-containing protein At5g16860
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g16860 Pentatricopeptide repeat-containing protein At5g16860. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014767 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0016556 mRNA modification Biological Process
GO:0048366 leaf development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G11290
ath:AT2G22070
ath:AT4G18750
ath:AT5G16860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.404
Rank 1 · TkA02G398900 · TK1151
Plastid0.351
Rank 2 · TkA02G398900 · TK1151
Cytoplasm0.112
Rank 3 · TkA02G398900 · TK1151
Nucleus0.093
Rank 4 · TkA02G398900 · TK1151
Peroxisome0.037
Rank 5 · TkA02G398900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR2-22 aa
PF13041PPR_22-22 aa
PF13812PPR_32-21 aa
PF12854PPR_14-19 aa
PF20431E_motif12-52 aa
PF13041PPR_221-73 aa
PF13812PPR_322-51 aa
PF12854PPR_122-50 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G398900PF01535PPR2222.5e-1453.1
TkA02G398900PF13041PPR_22221.5e-1041.7
TkA02G398900PF13812PPR_32214e-0524.3
TkA02G398900PF12854PPR_14190.03414.6
TkA02G398900PF20431E_motif12528.1e-2071.6
TkA02G398900PF13041PPR_221731.5e-1041.7
TkA02G398900PF13812PPR_322514e-0524.3
TkA02G398900PF12854PPR_122500.03414.6
TkA02G398900PF01535PPR24522.5e-1453.1
TkA02G398900PF13812PPR_355744e-0524.3
TkA02G398900PF12854PPR_157650.03414.6
TkA02G398900PF01535PPR63792.5e-1453.1
TkA02G398900PF13812PPR_3801174e-0524.3
TkA02G398900PF20431E_motif821268.1e-2071.6
TkA02G398900PF01535PPR871162.5e-1453.1
TkA02G398900PF13041PPR_2871161.5e-1041.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFL5Arabidopsis thalianasp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g1686049.800%Swiss-ProtMedium
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106536.900%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic36.000%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399036.600%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic36.200%Swiss-ProtMedium

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