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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G397950
Reference: TK1151 Chr: Chr02 Coordinates: 101103807-101105357 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1362 bp · TkA02G397950|TK1151|cDNA

ATGGATTTGGTATTTAGAGCAGCCAGACGGGAGATCAATTACGTTTGGTATTGCACCAAAAACGTTGACAAATTAAGAAATGAATCTCAAAAGCTCAAAGATATGAAGGCCATTCTTGAACGTCGAATCAATACAGCACAAGAAAAAGGAGAACTTCTCTTAGATGGTGTGCAAATCTGGATAAAAAACACAGACACTGAATTATCCACAGTCGCGAAGTTTCTTGAAGAAGAAGCTACCGCCAAAAAGACATGCTTCAA...

CDS

Download CDS FASTA

1362 bp · TkA02G397950|TK1151|CDS

ATGGATTTGGTATTTAGAGCAGCCAGACGGGAGATCAATTACGTTTGGTATTGCACCAAAAACGTTGACAAATTAAGAAATGAATCTCAAAAGCTCAAAGATATGAAGGCCATTCTTGAACGTCGAATCAATACAGCACAAGAAAAAGGAGAACTTCTCTTAGATGGTGTGCAAATCTGGATAAAAAACACAGACACTGAATTATCCACAGTCGCGAAGTTTCTTGAAGAAGAAGCTACCGCCAAAAAGACATGCTTCAA...

Protein

Download Protein FASTA

453 aa · TkA02G397950|TK1151|PROTEIN

MDLVFRAARREINYVWYCTKNVDKLRNESQKLKDMKAILERRINTAQEKGELLLDGVQIWIKNTDTELSTVAKFLEEEATAKKTCFNSRPSILNLYERKNLDDINTHKLTLKEILTALADDSVQIVGIYGLGGVGKTTLAKEVATEVRNLYADIVFITVSQTVDGKVIQEKVEAAAKRIIIGEKVLIILDDMWEYVELSEVGIPCGNSHMNCKILLTSRSKNVCESMNVQSNICVKTLKKDEAWVLFKRVVGERLETDIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G397950
TK1151 IDTkA02G397950
OH-1004 IDLXL04_014775
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)86.400
Protein coverage (%)TK1151 94.702 / OH-1004 48.808
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G397950
LocationChr02:101103807-101105357 (-)
DescriptionSimilar to At4g27190: Disease resistance protein At4g27190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27190 Disease resistance protein. No verified direct reference in this release
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At1g15890 Probable disease resistance protein. No verified direct reference in this release
At5g05400 Potential disease resistance protein. No verified direct reference in this release
At1g12290 Probable disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014775 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT1G12290
ath:AT1G61180
ath:AT1G61190
ath:AT4G27190
ath:AT4G27220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.383
Rank 1 · TkA02G397950 · TK1151
Cytoplasm0.319
Rank 2 · TkA02G397950 · TK1151
Endoplasmic reticulum0.169
Rank 3 · TkA02G397950 · TK1151
Nucleus0.123
Rank 4 · TkA02G397950 · TK1151
Extracellular0.062
Rank 5 · TkA02G397950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13173AAA_1420-60 aa
PF13207AAA_1720-87 aa
PF13238AAA_1822-56 aa
PF09386ParD24-48 aa
PF13401AAA_2228-61 aa
PF13191AAA_1630-68 aa
PF00005ABC_tran47-74 aa
PF20720nSTAND364-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G397950PF13173AAA_1420602.8e-0524.9
TkA02G397950PF13207AAA_1720870.003518.3
TkA02G397950PF13238AAA_1822560.05714.6
TkA02G397950PF09386ParD24480.3112.2
TkA02G397950PF13401AAA_2228610.01416.4
TkA02G397950PF13191AAA_1630680.0003521.9
TkA02G397950PF00005ABC_tran47740.0914.1
TkA02G397950PF20720nSTAND3641090.01415.8
TkA02G397950PF13238AAA_1869970.05714.6
TkA02G397950PF00154RecA_N911690.006516.7
TkA02G397950PF05970PIF11091630.01615.5
TkA02G397950PF00931NB-ARC1102531.9e-29103.2
TkA02G397950PF01637ATPase_21101771.8e-0731.9
TkA02G397950PF13191AAA_161111490.0003521.9
TkA02G397950PF25201nSTAND61111640.001919.0
TkA02G397950PF25199nSTAND_NTPase51122210.0005920.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719035.600%Swiss-ProtMedium
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722032.900%Swiss-ProtMedium
Q9LMP6Arabidopsis thalianasp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g1589029.800%Swiss-ProtLow
Q9FLB4Arabidopsis thalianasp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g0540029.300%Swiss-ProtLow
P60839Arabidopsis thalianasp|P60839|DRL2_ARATH Probable disease resistance protein At1g1229029.400%Swiss-ProtLow

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