TkA02G397910 | RubberDandelionOmics

Gene overview

TkA02G397910

Reference: TK1151 Chr: Chr02 Coordinates: 101095739-101099916 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · TkA02G397910|TK1151|cDNA

ATGTTGTACGCAACGTTCTTCGCCAATGACAACCTCACGACACCAAGGCCTGCCGATCTAATAGTCGCCACTCCTCCTCCTTCATCTCTTCAGGGGGCCCTTGCAGTACACACACCTGGTACAAGGCCTGGGGACCCAACAACCGAGTCACTGATAAATAAGAGCAGGTTTAAAAACCTAATTATATCCGGTGCACAAGGAGGACCAAATCCTCCACCACCGGCTGCAAAACTTGAACCAAATTCTCCATTCTATTTGGG...

CDS

Download CDS FASTA

1854 bp · TkA02G397910|TK1151|CDS

ATGTTGTACGCAACGTTCTTCGCCAATGACAACCTCACGACACCAAGGCCTGCCGATCTAATAGTCGCCACTCCTCCTCCTTCATCTCTTCAGGGGGCCCTTGCAGTACACACACCTGGTACAAGGCCTGGGGACCCAACAACCGAGTCACTGATAAATAAGAGCAGGTTTAAAAACCTAATTATATCCGGTGCACAAGGAGGACCAAATCCTCCACCACCGGCTGCAAAACTTGAACCAAATTCTCCATTCTATTTGGG...

Protein

Download Protein FASTA

617 aa · TkA02G397910|TK1151|PROTEIN

MLYATFFANDNLTTPRPADLIVATPPPSSLQGALAVHTPGTRPGDPTTESLINKSRFKNLIISGAQGGPNPPPPAAKLEPNSPFYLGPQDRPRDCITPTKLRGDNYEDWAGDIQTTLEARRKFDFLNETITAPVPPCTQSDWHTINAMLISWIMNTIDPEVKCYLSKYRDAKKLWDTLKSCFAVVNGPRIQQLKYSIVKCEQTKTMPVSEYFGKLTALWEELHRHEPIIDCSCCDACTAGSKHENRRDTDMLNKFLMGLH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G397910`
TK1151 ID	TkA02G397910
OH-1004 ID	LXL04_033506
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.100
Protein coverage (%)	TK1151 70.016 / OH-1004 79.266 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G397910`
Location	Chr02:101095739-101099916 (-)
Description	Similar to RE2: Retrovirus-related Pol polyprotein from transposon RE2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033506` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.474

Rank 1 · TkA02G397910 · TK1151

Nucleus0.376

Rank 2 · TkA02G397910 · TK1151

Cell membrane0.090

Rank 3 · TkA02G397910 · TK1151

Plastid0.069

Rank 4 · TkA02G397910 · TK1151

Endoplasmic reticulum0.065

Rank 5 · TkA02G397910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14244Retrotran_gag_395-133 aa

PF17241Retrotran_gag_4105-201 aa

PF14223Retrotran_gag_2114-224 aa

PF22936Pol_BBD438-483 aa

PF14223Retrotran_gag_2440-466 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G397910	`PF14244`	Retrotran_gag_3	95	133	3.8e-06	27.3
TkA02G397910	`PF17241`	Retrotran_gag_4	105	201	0.011	16.2
TkA02G397910	`PF14223`	Retrotran_gag_2	114	224	6.5e-05	23.5
TkA02G397910	`PF22936`	Pol_BBD	438	483	2.7e-07	31.5
TkA02G397910	`PF14223`	Retrotran_gag_2	440	466	6.5e-05	23.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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