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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G395890
Reference: TK1151 Chr: Chr02 Coordinates: 100511842-100519552 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4227 bp · TkA02G395890|TK1151|cDNA

ATACGTAGACCTACAGAGCTGCACTCGATTCGGCGAAAAACCAAAGGGAGGGAAAATAGAAAAAGAGATGGAGCGAGCGACTCTCTGAGTCGACACTGTTATTGCTAATCCTCCTAGCCAGTATCCGCGGCAGTTACTCACCGGAATAGTAAGTTTTGAAGGTGTGTTTTCTCTTTGCCTGAGTTCAAACGGGCTAGGGTTATCAAAATGTACATAAAGCAGGTCATCATTGAAGGGTTTAAGAGCTACAAAGAACAAGT...

CDS

Download CDS FASTA

3612 bp · TkA02G395890|TK1151|CDS

ATGTACATAAAGCAGGTCATCATTGAAGGGTTTAAGAGCTACAAAGAACAAGTTGCAACTGATGATTTCAGTCCAAAAGTCAACTGTGTTGTTGGTGCAAATGGATCTGGCAAGTCGAATTTCTTTTCAGCAATTCGGTTTGTGATAAGCGACCTCTTTCATAACTTGAGGAATGAAGATAAACACGCCTTCCTCCATGAAGGAGCAGGACACCAAGTTCTTTCAGCCTTTGTTGAGATTGTATTTGACAACTCTGACAA...

Protein

Download Protein FASTA

1203 aa · TkA02G395890|TK1151|PROTEIN

MYIKQVIIEGFKSYKEQVATDDFSPKVNCVVGANGSGKSNFFSAIRFVISDLFHNLRNEDKHAFLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVHLRRTIGTKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDAERLDLLKEIGGTRVYEERRRESLKIMQETGNKRNQIIQVVQYLDERLRELDEEKAELKKYQQLDKQRKSLEYTIYDKELNDARKELVEVDNERNAISEELVRKYNAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G395890
TK1151 IDTkA02G395890
OH-1004 IDLXL04_014802
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 98.938
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G395890
LocationChr02:100511842-100519552 (+)
DescriptionSimilar to SMC3: Structural maintenance of chromosomes protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27170 Central component of cohesin, a complex required for chromosome cohesion during the cell cycle.
Condensin and cohesin knockouts in Arabidopsis exhibit a titan seed phenotype.2002 · DOI: 10.1046/j.1365-313x.2002.01224.x
Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.2009 · DOI: 10.1007/s00412-009-0220-x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014802 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0006275 regulation of DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0019827 stem cell population maintenance Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0090307 mitotic spindle assembly Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000785 chromatin Cellular Component
KEGG gene cross-reference
ani:ANIA_06364
ath:AT2G27170
bta:281729
mmu:13006
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.902
Rank 1 · TkA02G395890 · TK1151
Cytoplasm0.181
Rank 2 · TkA02G395890 · TK1151
Cell membrane0.023
Rank 3 · TkA02G395890 · TK1151
Mitochondrion0.018
Rank 4 · TkA02G395890 · TK1151
Golgi apparatus0.012
Rank 5 · TkA02G395890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13175AAA_151-414 aa
PF02463SMC_N2-1179 aa
PF13476AAA_236-246 aa
PF13555AAA_2923-48 aa
PF13304AAA_2127-51 aa
PF04849HAP1_N174-328 aa
PF16516CC2-LZ181-224 aa
PF16516CC2-LZ230-262 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G395890PF13175AAA_1514148e-0936.2
TkA02G395890PF02463SMC_N211791.1e-57195.7
TkA02G395890PF13476AAA_2362468.8e-1350.1
TkA02G395890PF13555AAA_2923480.2112.1
TkA02G395890PF13304AAA_2127513.7e-1660.7
TkA02G395890PF04849HAP1_N1743280.004117.1
TkA02G395890PF16516CC2-LZ1812240.004118.2
TkA02G395890PF16516CC2-LZ2302620.004118.2
TkA02G395890PF13476AAA_232313448.8e-1350.1
TkA02G395890PF23577LysM_RLK2392620.3111.8
TkA02G395890PF16516CC2-LZ3093450.004118.2
TkA02G395890PF13476AAA_233574488.8e-1350.1
TkA02G395890PF16516CC2-LZ3944860.004118.2
TkA02G395890PF04849HAP1_N4154970.004117.1
TkA02G395890PF16516CC2-LZ4804980.004118.2
TkA02G395890PF06470SMC_hinge5226341.4e-2797.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q56YN8Arabidopsis thalianasp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 363.300%Swiss-ProtHigh

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