TkA02G392140 | RubberDandelionOmics

Gene overview

TkA02G392140

Reference: TK1151 Chr: Chr02 Coordinates: 99676064-99677761 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1375 bp · TkA02G392140|TK1151|cDNA

CTTCAAACTTCTCTCACATACTATGCATCTCTCTTTCTCTCTTAACCCACATGCAAACATAATGGAGCAAGGAAACCCTAAATCACCGGTGGCTCTTATTGTCGGGGTGACTGGCATGGTCGGCGTTGCTTTGACCGAAGCCTTGAAGAAATCGACAACATTAGGTGGTCCATGGACAGTCTACGGTGTTTCACGGCGGCCATTACCCACCTGGTTCCCATCCTCCCTCCTCGACAACTACCTCATTCTCGACACCCTAA...

CDS

Download CDS FASTA

1167 bp · TkA02G392140|TK1151|CDS

ATGCATCTCTCTTTCTCTCTTAACCCACATGCAAACATAATGGAGCAAGGAAACCCTAAATCACCGGTGGCTCTTATTGTCGGGGTGACTGGCATGGTCGGCGTTGCTTTGACCGAAGCCTTGAAGAAATCGACAACATTAGGTGGTCCATGGACAGTCTACGGTGTTTCACGGCGGCCATTACCCACCTGGTTCCCATCCTCCCTCCTCGACAACTACCTCATTCTCGACACCCTAAACCAAGAAAACACACACCAACT...

Protein

Download Protein FASTA

388 aa · TkA02G392140|TK1151|PROTEIN

MHLSFSLNPHANIMEQGNPKSPVALIVGVTGMVGVALTEALKKSTTLGGPWTVYGVSRRPLPTWFPSSLLDNYLILDTLNQENTHQLLSPLSSQITHLFWVAISVNQSEDLNISLNSTMLSNVLNALTSSENSKLRHVTLQTGTKQYMGPIFDPTLSAQLVPHDPPFMEDYSRIPFPNFYYDLEDIVASYPKSFTYSIHRSSIIFGASSRSFINALLMLSVYALVCKRENYPFRYYGNKYTWEHFCDASDARVLAEQQIW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G392140`
TK1151 ID	TkA02G392140
OH-1004 ID	LXL04_014834
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.600
Protein coverage (%)	TK1151 89.433 / OH-1004 72.899 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G392140

Location Chr02:99676064-99677761 (+)

Description Similar to CYC2: (S)-8-oxocitronellyl enol synthase CYC2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24220`	Involved in vascular strand development.	Involvement of the VEP1 gene in vascular strand development in Arabidopsis thaliana.2002 · DOI: 10.1093/pcp/pcf042 The VEP1 gene (At4g24220) encodes a short-chain dehydrogenase/reductase with 3-oxo-Delta4,5-steroid 5beta-reductase activity in Arabidopsis thaliana L.2009 · DOI: 10.1016/j.biochi.2008.12.005

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014834 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006720 isoprenoid metabolic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0016099 monoterpenoid biosynthetic process Biological Process

GO:0043693 monoterpene biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Molecular Function

GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor Molecular Function

GO:0035671 enone reductase activity Molecular Function

GO:0042802 identical protein binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ag:AFW98981

ath:AT4G24220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.830

Rank 1 · TkA02G392140 · TK1151

Nucleus0.340

Rank 2 · TkA02G392140 · TK1151

Peroxisome0.056

Rank 3 · TkA02G392140 · TK1151

Endoplasmic reticulum0.045

Rank 4 · TkA02G392140 · TK1151

Mitochondrion0.043

Rank 5 · TkA02G392140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370Epimerase24-153 aa

PF22917PRISE93-386 aa

PF14055NVEALA99-141 aa

PF13993YccJ253-283 aa

PF14055NVEALA255-278 aa

PF29543F36G3_coil318-353 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G392140	`PF01370`	Epimerase	24	153	4.3e-05	23.8
TkA02G392140	`PF22917`	PRISE	93	386	1.6e-15	57.8
TkA02G392140	`PF14055`	NVEALA	99	141	0.24	11.9
TkA02G392140	`PF13993`	YccJ	253	283	0.12	13.3
TkA02G392140	`PF14055`	NVEALA	255	278	0.24	11.9
TkA02G392140	`PF29543`	F36G3_coil	318	353	0.26	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STX2`	Arabidopsis thaliana	sp\|Q9STX2\|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase	46.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card