TkA02G387610 | RubberDandelionOmics

Gene overview

TkA02G387610

Reference: TK1151 Chr: Chr02 Coordinates: 98512204-98513926 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · TkA02G387610|TK1151|cDNA

ATGGGATCATCGTTGTCTAATTTGACCGAGTGGGGTCCGATCGCTGGCGACGGACCGGGACTCGGCGACATACCCGAGAGCTGCGTGGCGTGTGTTTTTTTGTATCTTACGCCGCCGGAGATATGTAATCTAGCTCGCCTCAACCGTGCTTTCCGTGGCGCGGCGTCTTCGGACGCCGTGTGGGAATCGAAGCTTCCACATAACTATCAAGATCTGCTAGACCTGTTGCCGCCGGAGAGGTACCAAAACCTGTGTAAAAA...

CDS

Download CDS FASTA

930 bp · TkA02G387610|TK1151|CDS

ATGGGATCATCGTTGTCTAATTTGACCGAGTGGGGTCCGATCGCTGGCGACGGACCGGGACTCGGCGACATACCCGAGAGCTGCGTGGCGTGTGTTTTTTTGTATCTTACGCCGCCGGAGATATGTAATCTAGCTCGCCTCAACCGTGCTTTCCGTGGCGCGGCGTCTTCGGACGCCGTGTGGGAATCGAAGCTTCCACATAACTATCAAGATCTGCTAGACCTGTTGCCGCCGGAGAGGTACCAAAACCTGTGTAAAAA...

Protein

Download Protein FASTA

309 aa · TkA02G387610|TK1151|PROTEIN

MGSSLSNLTEWGPIAGDGPGLGDIPESCVACVFLYLTPPEICNLARLNRAFRGAASSDAVWESKLPHNYQDLLDLLPPERYQNLCKKDVFALLSTPVPFDDGNKASMAFDFNLAIGEVWLDKVTGRVCLSISTKAMSITGIEDRRYWNWVSTEESRFNIVAYLQQIWWFEVDGSIKFPLPPDIYTVFFRIHLGRFSKRLGRRVCYFEHTHGWDIKPVRFDLSTSDGQESSTEFYLDDCAEDEANGCHKRGCWIEYKVGEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G387610`
TK1151 ID	TkA02G387610
OH-1004 ID	LXL04_014875
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G387610

Location Chr02:98512204-98513926 (-)

Description Similar to PP2A15: F-box protein PP2-A15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53000`	F-box protein PP2-A15.	No verified direct reference in this release
`At1g12710`	F-box protein PP2-A12.	No verified direct reference in this release
`At3g61060`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g63090`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g52120`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014875 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G12710

ath:AT1G63090

ath:AT3G53000

ath:AT3G61060

ath:AT5G52120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.471

Rank 1 · TkA02G387610 · TK1151

Cytoplasm0.459

Rank 2 · TkA02G387610 · TK1151

Cell membrane0.134

Rank 3 · TkA02G387610 · TK1151

Endoplasmic reticulum0.088

Rank 4 · TkA02G387610 · TK1151

Lysosome / Vacuole0.049

Rank 5 · TkA02G387610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like22-63 aa

PF00646F-box23-62 aa

PF14299PP2127-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G387610	`PF12937`	F-box-like	22	63	6.1e-06	26.6
TkA02G387610	`PF00646`	F-box	23	62	0.00024	21.6
TkA02G387610	`PF14299`	PP2	127	296	7.2e-40	137.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LF92`	Arabidopsis thaliana	sp\|Q9LF92\|P2A15_ARATH F-box protein PP2-A15	72.600%	Swiss-Prot	High
`Q9LN77`	Arabidopsis thaliana	sp\|Q9LN77\|P2A12_ARATH F-box protein PP2-A12	53.400%	Swiss-Prot	High
`Q9LEX0`	Arabidopsis thaliana	sp\|Q9LEX0\|P2A13_ARATH F-box protein PP2-A13	53.100%	Swiss-Prot	High
`Q9CAN4`	Arabidopsis thaliana	sp\|Q9CAN4\|P2A11_ARATH F-box protein PP2-A11	49.100%	Swiss-Prot	Medium
`Q9FJ80`	Arabidopsis thaliana	sp\|Q9FJ80\|P2A14_ARATH F-box protein PP2-A14	44.900%	Swiss-Prot	Medium

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