TkA02G373140 | RubberDandelionOmics

Gene overview

TkA02G373140

Reference: TK1151 Chr: Chr02 Coordinates: 94957906-94963546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2301 bp · TkA02G373140|TK1151|cDNA

CACAAACAGCACAAGAAAGAAAAAAAACAAGTGGGAAAATATTACAAAAATCTCCCCCACCCCTTTCGCTTTGGAGACTGCAACCATCTCAGTGTCTTCATATCCCCTTAACCTTCGAACCTCCATTCTTCATCTTCACCAATCACCGGAACCACCATTAATCTTCACCTTCACCCAACACAATGATCACTCTTTCAGACTTCTATCATGTCATGACCGCCGTCGTTCCTCTCTACGTCGCCATGATCTTAGCCTACGGC...

CDS

Download CDS FASTA

1785 bp · TkA02G373140|TK1151|CDS

ATGATCACTCTTTCAGACTTCTATCATGTCATGACCGCCGTCGTTCCTCTCTACGTCGCCATGATCTTAGCCTACGGCTCCGTCAAATGGTGGAAGATCTTCACTCCCGATCAATGCTCCGGCATCAACCGTTTCGTTGCTCTCTTCGCCGTCCCCCTCCTCTCCTTCCACTTCATCTCCACCAACAACCCTTACAAAATGAACCTCCGCTTCATCGCCGCCGATACCCTCCAGAAACTGGTGGTTCTTGCCGCCCTCGC...

Protein

Download Protein FASTA

594 aa · TkA02G373140|TK1151|PROTEIN

MITLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYKMNLRFIAADTLQKLVVLAALAVWSNVSKRGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGGESGSLMVQIVVLQCIIWYTLMLFLFEFRGARLLISEQFPGTAGAIASIQVDSDIMSLDGRQILETEAEIKEDGKLHVTVRKSNASRSDVFSRRSQGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHNDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G373140`
TK1151 ID	TkA02G373140
OH-1004 ID	LXL04_015036
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G373140

Location Chr02:94957906-94963546 (-)

Description Similar to PIN1C: Probable auxin efflux carrier component 1c

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73590`	Acts as a component of the auxin efflux carrier; this activity is enhanced when activated by D6PK-mediated phosphorylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0232300`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release
`Os02g0743400`	Acts as a component of the auxin efflux carrier.	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.2005 · DOI: 10.1093/pcp/pci183
`Os11g0137000`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release
`Os12g0133800`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015036 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009416 response to light stimulus Biological Process

GO:0009606 tropism Biological Process

GO:0009630 gravitropism Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009908 flower development Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010229 inflorescence development Biological Process

KEGG gene cross-reference

ath:AT1G70940

ath:AT1G73590

ath:AT2G01420

dosa:Os02g0743400

dosa:Os06g0232300

osa:4330700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.777

Rank 1 · TkA02G373140 · TK1151

Endoplasmic reticulum0.094

Rank 2 · TkA02G373140 · TK1151

Cytoplasm0.073

Rank 3 · TkA02G373140 · TK1151

Lysosome / Vacuole0.063

Rank 4 · TkA02G373140 · TK1151

Golgi apparatus0.043

Rank 5 · TkA02G373140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03547Mem_trans9-587 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G373140	`PF03547`	Mem_trans	9	587	3.7e-128	427.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C6B8`	Arabidopsis thaliana	sp\|Q9C6B8\|PINI_ARATH Auxin efflux carrier component 1	69.600%	Swiss-Prot	High
`Q67UL3`	Oryza sativa subsp. japonica	sp\|Q67UL3\|PIN1C_ORYSJ Probable auxin efflux carrier component 1c	74.100%	Swiss-Prot	High
`Q5SMQ9`	Oryza sativa subsp. japonica	sp\|Q5SMQ9\|PIN1A_ORYSJ Auxin efflux carrier component 1a	71.700%	Swiss-Prot	High
`P0C0X5`	Oryza sativa subsp. japonica	sp\|P0C0X5\|PIN1B_ORYSJ Probable auxin efflux carrier component 1b	63.500%	Swiss-Prot	High
`Q0IQA5`	Oryza sativa subsp. japonica	sp\|Q0IQA5\|PIN1D_ORYSJ Probable auxin efflux carrier component 1d	62.900%	Swiss-Prot	High

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