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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G372710
Reference: TK1151 Chr: Chr02 Coordinates: 94835306-94839402 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2149 bp · TkA02G372710|TK1151|cDNA

GTAAAATAATTGGGACAATGGTCCAAAAGCGTTCAGTGCTCTCACATGGCGACGATGCATGTGATGTGAATCATCGAGATCGGGCTCACCTACCATTATATTTTACGACAATCTTCACTTCACTTCTGCCCATAAATACCCACGAGGCCACGAAGCAAATCCCACAAATATCATCAATCCCTTTGCATTTTGCATAGTTAGATCCAACTTCTATGCAGCAGAAAGGAAGATCATTCAACAGTAGATCACGATCATTCTCA...

CDS

Download CDS FASTA

1479 bp · TkA02G372710|TK1151|CDS

ATGGCTACTGTCGTTAATGGAGAAGAACGCGAGATTCAGAAGAATTACTGGGTGGAACACTCTGTCGACCTTACAGTTGAGGCTATGATGCTTGATTCTATGGCATCTGATCTTGACAAAGAAGAACGCCCTGAGGTACTGTCACTACTCCCACCTTATGAAGGGAAAACCGTTCTTGAACTAGGAGCTGGAATTGGTCGTTTTACTGGTGAACTAGTCAAAAAGGCTGGAAAGGTCATAGCCCTTGATTTCATTGAAAG...

Protein

Download Protein FASTA

492 aa · TkA02G372710|TK1151|PROTEIN

MATVVNGEEREIQKNYWVEHSVDLTVEAMMLDSMASDLDKEERPEVLSLLPPYEGKTVLELGAGIGRFTGELVKKAGKVIALDFIESVVKKNESNNGHHKNVEFMCADVTSPDLKFEAESIDLIFSNWLLMYLSDKEVENIAERLLKWVKVGGHIFFRESCFHQSGDHKRKSNPTHYREPRFYTKVFKECHVSNESGNSYELSLVGSKCIGAYVRNKKNQNQICWIWQKVNAEDDKGFQKFLDNVQYKSSGILRYERIFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G372710
TK1151 IDTkA02G372710
OH-1004 IDLXL04_015043
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G372710
LocationChr02:94835306-94839402 (+)
DescriptionSimilar to NMT1: Phosphoethanolamine N-methyltransferase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g48600 Catalyzes N-methylation of phosphomonomethylethanolamine and phosphodimethylethanolamine, the two methylation steps required to convert phosphomonoethanolamine to phosphocholine.
Identification of phosphomethylethanolamine N-methyltransferase from Arabidopsis and its role in choline and phospholipid metabolism.2010 · DOI: 10.1074/jbc.m110.112151
At3g18000 Involved in phosphocholine biosynthesis.
The xipotl mutant of Arabidopsis reveals a critical role for phospholipid metabolism in root system development and epidermal cell integrity.2004 · DOI: 10.1105/tpc.103.018648
NMT1 and NMT3 N -Methyltransferase Activity Is Critical to Lipid Homeostasis, Morphogenesis, and Reproduction.2018 · DOI: 10.1104/pp.18.00457
Phosphoethanolamine N-methyltransferase 1 contributes to maintenance of root apical meristem by affecting ROS and auxin-regulated cell differentiation in Arabidopsis.2019 · DOI: 10.1111/nph.16028
At1g73600 Involved in phosphocholine biosynthesis.
NMT1 and NMT3 N -Methyltransferase Activity Is Critical to Lipid Homeostasis, Morphogenesis, and Reproduction.2018 · DOI: 10.1104/pp.18.00457

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015043 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006651 diacylglycerol biosynthetic process Biological Process
GO:0006656 phosphatidylcholine biosynthetic process Biological Process
GO:0009555 pollen development Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0019432 triglyceride biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0042425 choline biosynthetic process Biological Process
GO:0046337 phosphatidylethanolamine metabolic process Biological Process
GO:0048528 post-embryonic root development Biological Process
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G48600
ath:AT1G73600
ath:AT3G18000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.727
Rank 1 · TkA02G372710 · TK1151
Nucleus0.396
Rank 2 · TkA02G372710 · TK1151
Mitochondrion0.070
Rank 3 · TkA02G372710 · TK1151
Peroxisome0.053
Rank 4 · TkA02G372710 · TK1151
Cell membrane0.053
Rank 5 · TkA02G372710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01209Ubie_methyltran32-157 aa
PF13489Methyltransf_2343-164 aa
PF08003Methyltransf_946-80 aa
PF05175MTS47-127 aa
PF01189Methyltr_RsmB-F49-124 aa
PF01135PCMT50-108 aa
PF00398RrnaAD50-114 aa
PF01269Fibrillarin53-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G372710PF01209Ubie_methyltran321576.3e-2072.2
TkA02G372710PF13489Methyltransf_23431641.2e-29103.9
TkA02G372710PF08003Methyltransf_946800.0002520.8
TkA02G372710PF05175MTS471275.4e-0936.6
TkA02G372710PF01189Methyltr_RsmB-F491240.08713.2
TkA02G372710PF01135PCMT501083e-0937.7
TkA02G372710PF00398RrnaAD501140.000122.2
TkA02G372710PF01269Fibrillarin531270.01115.6
TkA02G372710PF10294Methyltransf_16531260.01615.7
TkA02G372710PF13847Methyltransf_31541781.2e-36126.4
TkA02G372710PF02353CMAS54845.6e-1556.1
TkA02G372710PF01728FtsJ541262.2e-0835.0
TkA02G372710PF07021MetW54721.5e-0628.7
TkA02G372710PF06325PrmA551550.0006819.9
TkA02G372710PF05891Methyltransf_PK561924.6e-1246.7
TkA02G372710PF00891Methyltransf_2561715.7e-0833.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q944H0Arabidopsis thalianasp|Q944H0|PEAM2_ARATH Phosphoethanolamine N-methyltransferase 283.300%Swiss-ProtHigh
Q9FR44Arabidopsis thalianasp|Q9FR44|PEAM1_ARATH Phosphoethanolamine N-methyltransferase 182.400%Swiss-ProtHigh
Q9C6B9Arabidopsis thalianasp|Q9C6B9|PEAM3_ARATH Phosphoethanolamine N-methyltransferase 381.400%Swiss-ProtHigh

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