TkA02G368040 | RubberDandelionOmics

Gene overview

TkA02G368040

Reference: TK1151 Chr: Chr02 Coordinates: 93662693-93663891 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1023 bp · TkA02G368040|TK1151|cDNA

GTCAGACAACATACCTTTCGAAATCCAAGTGGAAATCATCAAAGACTTCCTGTGAACTCACTGGTGCAACTCAGATCGGTTTCCAAACGATGGAAGTCTTTAATCGAAAGCCGTGAATTTATCGCTGGTTACAATCTCCACCAAGCTCAAACTCGCCGTCTACTCTTATGGTACGAATATCCATTAATAGACACCGAGGAAAAGCACGTTTCTTTTATTCATGACCACACTTTTTCCCAACAAGAGTCTACCATAACCGT...

CDS

Download CDS FASTA

1023 bp · TkA02G368040|TK1151|CDS

GTCAGACAACATACCTTTCGAAATCCAAGTGGAAATCATCAAAGACTTCCTGTGAACTCACTGGTGCAACTCAGATCGGTTTCCAAACGATGGAAGTCTTTAATCGAAAGCCGTGAATTTATCGCTGGTTACAATCTCCACCAAGCTCAAACTCGCCGTCTACTCTTATGGTACGAATATCCATTAATAGACACCGAGGAAAAGCACGTTTCTTTTATTCATGACCACACTTTTTCCCAACAAGAGTCTACCATAACCGT...

Protein

Download Protein FASTA

340 aa · TkA02G368040|TK1151|PROTEIN

VRQHTFRNPSGNHQRLPVNSLVQLRSVSKRWKSLIESREFIAGYNLHQAQTRRLLLWYEYPLIDTEEKHVSFIHDHTFSQQESTITVPVLAKLLNDSLIVGSSQGLLCFMVVPGVLRWGLETILGFGVCPIANDPTIVKITQVNIIWEMKSRVIVPRVVEVVIDRFIHWFAFDKIVSVDGGGGGGFSTKNLILSFDMSTQEFREVELPESLAHQSYSNMSVSNFWDSLAVLEYGTNMNKHVCNVWVTDRGVPNLFTKIFT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G368040`
TK1151 ID	TkA02G368040
OH-1004 ID	LXL04_015103
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	79.900
Protein coverage (%)	TK1151 96.176 / OH-1004 96.030 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G368040`
Location	Chr02:93662693-93663891 (+)
Description	Similar to CPR1: F-box protein CPR1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_015103` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009626 plant-type hypersensitive response Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031348 negative regulation of defense response Biological Process GO:0042177 negative regulation of protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference	ath:AT1G32660 ath:AT1G70380 ath:AT3G06240 ath:AT3G16210 ath:AT4G12560 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.620

Rank 1 · TkA02G368040 · TK1151

Nucleus0.366

Rank 2 · TkA02G368040 · TK1151

Cell membrane0.126

Rank 3 · TkA02G368040 · TK1151

Endoplasmic reticulum0.082

Rank 4 · TkA02G368040 · TK1151

Lysosome / Vacuole0.052

Rank 5 · TkA02G368040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box14-40 aa

PF12937F-box-like15-37 aa

PF07734FBA_1166-264 aa

PF08268FBA_3189-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G368040	`PF00646`	F-box	14	40	8.8e-06	26.1
TkA02G368040	`PF12937`	F-box-like	15	37	0.0057	17.1
TkA02G368040	`PF07734`	FBA_1	166	264	1.2e-05	25.3
TkA02G368040	`PF08268`	FBA_3	189	311	0.0013	18.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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