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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G355660
Reference: TK1151 Chr: Chr02 Coordinates: 90334340-90338022 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2328 bp · TkA02G355660|TK1151|cDNA

AAATAACGTTTGATTCATATGACTGCATTTTCAAATGAATTCACACAACGTATGGTTACGTTTTCCTCTGTTCTTCGATCTCAATCATCACGTACTCAATCCTTATCTCCAATCCGAAAATAAACGTAAAGATCTAAATGTAATTTGCGAACATGACGAAAACCCTAGGTTTTTGGATTCCGACAGAGGACTTTTTCTGGGGTAACTTAAAATCCAAATGGTGACAGAACGGGAAAGGGGGTTTACAGATGGAAGAAGAA...

CDS

Download CDS FASTA

1905 bp · TkA02G355660|TK1151|CDS

ATGGAAGAAGAAAAGGAGCTATCCAAGTGTAATAATTGCAGAATCGCTAGGGATGTTGTCGAAGAATTGATTGGGATTACCGAAGCTGCTAAATCAATGGGAGAGTTTCGAGGAACGCAGAAGAAAGAGAGCCAAATGCTCCTAAGGCGATTGAGGCAGTGTCTGCCCTTATTGGAAGAGCTTCGAGATCTTGATGCACAGATTCCAGAAAATTGCTTATCATGTTTGCATAGATTGAAAAGAGCGTTTATCCTGGCCAA...

Protein

Download Protein FASTA

634 aa · TkA02G355660|TK1151|PROTEIN

MEEEKELSKCNNCRIARDVVEELIGITEAAKSMGEFRGTQKKESQMLLRRLRQCLPLLEELRDLDAQIPENCLSCLHRLKRAFILAKKLLKTCHAGSKIYLVLETNAMFSRFQSVYDKLNHAMDGFPYKEIGISEEVKEQVELMCTQLKRAKPQVDSQEMELTSDMMTVLSADTDRIFECEAIRRLANKLSLNTLEELRTETVVVRKLVKERRGQNAQGTEKIINLLDKFKRFAGIEQANVLDDPAPCNRTLQKCASITI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G355660
TK1151 IDTkA02G355660
OH-1004 IDLXL04_015213
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G355660
LocationChr02:90334340-90338022 (-)
DescriptionSimilar to PUB15: U-box domain-containing protein 15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g46510 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2ZLU6 Defense related protein that negatively regulates programmed cell death. No verified direct reference in this release
Os12g0570000 E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance.
Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity.2004 · DOI: 10.1105/tpc.104.025171
SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.2008 · DOI: 10.1105/tpc.108.058610
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
GO:0070696 transmembrane receptor protein serine/threonine kinase binding Molecular Function
KEGG gene cross-reference
ath:AT2G28830
ath:AT3G46510
ath:AT3G54850
ath:AT5G42340
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.587
Rank 1 · TkA02G355660 · TK1151
Nucleus0.337
Rank 2 · TkA02G355660 · TK1151
Cell membrane0.182
Rank 3 · TkA02G355660 · TK1151
Mitochondrion0.061
Rank 4 · TkA02G355660 · TK1151
Endoplasmic reticulum0.060
Rank 5 · TkA02G355660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13646HEAT_228-52 aa
PF08822DUF180437-85 aa
PF24768ARM_ARMC539-53 aa
PF22215MLKL_N39-124 aa
PF25368PUB10_N41-152 aa
PF13445zf-RING_UBOX72-77 aa
PF15227zf-C3HC4_472-80 aa
PF05276SH3BP5132-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G355660PF13646HEAT_228520.01316.5
TkA02G355660PF08822DUF180437850.3711.4
TkA02G355660PF24768ARM_ARMC539531.2e-1661.6
TkA02G355660PF22215MLKL_N391240.003117.7
TkA02G355660PF25368PUB10_N411521.6e-31110.2
TkA02G355660PF13445zf-RING_UBOX72770.01316.2
TkA02G355660PF15227zf-C3HC4_472800.1113.4
TkA02G355660PF05276SH3BP51322130.09213.2
TkA02G355660PF08822DUF18041322310.3711.4
TkA02G355660PF05804KAP1332070.001617.5
TkA02G355660PF22215MLKL_N1331770.003117.7
TkA02G355660PF07307HEPPP_synt_11521730.1512.4
TkA02G355660PF13646HEAT_21701910.01316.5
TkA02G355660PF24768ARM_ARMC51712171.2e-1661.6
TkA02G355660PF07307HEPPP_synt_11822290.1512.4
TkA02G355660PF25598ARM_PUB1912101.3e-2487.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q681N2Arabidopsis thalianasp|Q681N2|PUB15_ARATH U-box domain-containing protein 1559.200%Swiss-ProtHigh
Q9SNC6Arabidopsis thalianasp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 1339.100%Swiss-ProtMedium
Q8VZ40Arabidopsis thalianasp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 1435.000%Swiss-ProtMedium
A2ZLU6Oryza sativa subsp. indicasp|A2ZLU6|SL11_ORYSI Protein spotted leaf 1139.500%Swiss-ProtMedium
Q0IMG9Oryza sativa subsp. japonicasp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL1139.500%Swiss-ProtMedium

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