TkA02G339500 | RubberDandelionOmics

Gene overview

TkA02G339500

Reference: TK1151 Chr: Chr02 Coordinates: 86190621-86193158 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1869 bp · TkA02G339500|TK1151|cDNA

GTTTCCCCAAAAAAAGCAGAATTTATCACTGTTCAATTCTCGTGATGCAGATACTTTCAGCGCGCAACAACGGAATGGGTTTGAGAAGATGCAGAATTAATTCTCACCCGTTTGATGTCCATTTAACAGGGACTTTAATGCCGGTCGTATCTGTATCTCCCTACACACTCATTTCTTTCTGTTCCCACCATCAAACAAAATCTATAAAAATGGTACCTGTTTCTTTCCATTTCAGATCGTGTCTCATTCGAGCAATTGAG...

CDS

Download CDS FASTA

1101 bp · TkA02G339500|TK1151|CDS

ATGATCCAAAATGAAAATGATAGGGTTATGCTTGTTTTTAGAACGGCGACAGTGTTGCTGTGGTTGCGGACTTGTATGGCAGATACATTACCTGCTAACTTTGTTTTTGGCGATTCTTTGGTGGAAGTAGGCAACAATAACTACATTACATCATTATCGAAGGCAAATTACGTACCAAATGGGATCGATTTTGGGAAGCCCACCGGACGTTATACAAATGGAAGAACAATTGTCGACATTCTAGGAGAGGAATTGGGTTT...

Protein

Download Protein FASTA

366 aa · TkA02G339500|TK1151|PROTEIN

MIQNENDRVMLVFRTATVLLWLRTCMADTLPANFVFGDSLVEVGNNNYITSLSKANYVPNGIDFGKPTGRYTNGRTIVDILGEELGLKDYTPPYLAPTTSGPLVLSGVSYASGGGGILNETGKIFGGRINMDAQLDNFENTRHDIISRIGVSAAQELFNGALFSVTMGSNDFINNYLTPILSTVEQKLVPPEEFVGTLISRFRLQLMRLYNLGARKIVIPNVGPIGCIPYQRDVNPSEGNDCVAFPNHLAQLYNGQLKTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G339500`
TK1151 ID	TkA02G339500
OH-1004 ID	LXL04_015384
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	62.100
Protein coverage (%)	TK1151 94.536 / OH-1004 95.787 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G339500

Location Chr02:86190621-86193158 (+)

Description Similar to At4g16230: GDSL esterase/lipase At4g16230

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At5g41890`	GDSL esterase/lipase At5g41890.	No verified direct reference in this release
`At1g29660`	Involved in EDS1-dependent systemic acquired resistance, maybe in phloem-mediated long-distance signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015384 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT2G23540

ath:AT3G50400

ath:AT4G16230

ath:AT5G41890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.673

Rank 1 · TkA02G339500 · TK1151

Lysosome / Vacuole0.085

Rank 2 · TkA02G339500 · TK1151

Endoplasmic reticulum0.075

Rank 3 · TkA02G339500 · TK1151

Cytoplasm0.072

Rank 4 · TkA02G339500 · TK1151

Cell membrane0.064

Rank 5 · TkA02G339500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL34-347 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G339500	`PF00657`	Lipase_GDSL	34	347	2.5e-29	103.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	65.200%	Swiss-Prot	High
`O80470`	Arabidopsis thaliana	sp\|O80470\|GDL38_ARATH GDSL esterase/lipase At2g23540	52.800%	Swiss-Prot	High
`Q9M2R9`	Arabidopsis thaliana	sp\|Q9M2R9\|GDL58_ARATH GDSL esterase/lipase At3g50400	51.600%	Swiss-Prot	High
`Q9FJ25`	Arabidopsis thaliana	sp\|Q9FJ25\|GDL81_ARATH GDSL esterase/lipase At5g41890	43.100%	Swiss-Prot	Medium
`Q9C7N5`	Arabidopsis thaliana	sp\|Q9C7N5\|GDL14_ARATH GDSL esterase/lipase At1g29660	41.400%	Swiss-Prot	Medium

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