Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3083 bp · TkA02G338820|TK1151|cDNA
TTTCTTTTCACATCACTCCCTTACAATTCACTAAATCATTCATGTCCTTCACTGAAACGAGTGGGGGGTAACAAAGGTTTTCTCACAGGCAAAACCACATCTCTAAAATGCAACAATCTCCGGCAAAACACTCCATTTCGTGAAAATTCGAACGACTCTTATCTTTATAACCAATAAATGGAGGATGGAGATGATGATTTCGGCGATTTATACGCAGATGTTGAAGTGGAAGCAAGCGCAGCCATGAGTGTTGCTCCACA...
2790 bp · TkA02G338820|TK1151|CDS
ATGGAGGATGGAGATGATGATTTCGGCGATTTATACGCAGATGTTGAAGTGGAAGCAAGCGCAGCCATGAGTGTTGCTCCACAATTCTCACAACTGAAGTTCGTAAACGATGGAAGTGGTAAGCGGAACAATGCCTTAATTGAGAGTGGTGATAAAGAGGAGAGAGTAAGTGATGGTGACGACGACGACGACGACGACGATTTGAATATAGTATTGAATAGCGATGATGATACTATAAGGCATGGGGATGGTTCAACAAT...
Protein
Download Protein FASTA929 aa · TkA02G338820|TK1151|PROTEIN
MEDGDDDFGDLYADVEVEASAAMSVAPQFSQLKFVNDGSGKRNNALIESGDKEERVSDGDDDDDDDDLNIVLNSDDDTIRHGDGSTIAWTNTNLQSGELEDEDDDNIGTEEFAGGKAVGNSHSLYKYSRSQSAAYGSESKGSGCVASAYLSRDDNGYCQRTMGQRFSLPWSRSILDVNIDVFEQKPWKHPGADITDYFNFGLNEDSWKLYCNQLDEFRHKGSILSDSPASDPPELQERKGRAIEVEDSIVERQSSMDMRR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G338820 |
|---|---|
| TK1151 ID | TkA02G338820 |
| OH-1004 ID | LXL04_015392 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G338820 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:85972923-85977147 (-) | |||||||||
| Description | Similar to FIPS3: FIP1[III]-like protein | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006396 RNA processing Biological Process GO:0006397 mRNA processing Biological Process GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage Biological Process GO:0031124 mRNA 3'-end processing Biological Process GO:0031440 regulation of mRNA 3'-end processing Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005847 mRNA cleavage and polyadenylation specificity factor complex Cellular Component GO:0016607 nuclear speck Cellular Component GO:0003723 RNA binding Molecular Function GO:0030234 enzyme regulator activity Molecular Function GO:0042802 identical protein binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G66652 ath:AT5G58040 mmu:66899 pon:100172699 rno:289582 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05182Fip1176-218 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G338820 | PF05182 | Fip1 | 176 | 218 | 2.1e-21 | 75.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.