TkA02G333080 | RubberDandelionOmics

Gene overview

TkA02G333080

Reference: TK1151 Chr: Chr02 Coordinates: 84528046-84530913 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1269 bp · TkA02G333080|TK1151|cDNA

ATGATGACTGGCCTGATCAACTGCTACAACTCTCTTGTTAATGTTGAACTAGCCCCTCCTGTGCTAATGAGTGAACTTGATCAGATTCACCCAGATGATGTTGAAAAAATGGACATCTCTTGGCATATCGGAATGGCTGTGTTTCGTGCCAAGAAATTCACACAGCGTACGGGGAGGAATGCTTGGGGAATCGGAGGTGATCGCAAGATGGGCAATAGAGATGCCCCAACGAACAATGATAGAGCCTTGGTGGCACAGCA...

CDS

Download CDS FASTA

1269 bp · TkA02G333080|TK1151|CDS

ATGATGACTGGCCTGATCAACTGCTACAACTCTCTTGTTAATGTTGAACTAGCCCCTCCTGTGCTAATGAGTGAACTTGATCAGATTCACCCAGATGATGTTGAAAAAATGGACATCTCTTGGCATATCGGAATGGCTGTGTTTCGTGCCAAGAAATTCACACAGCGTACGGGGAGGAATGCTTGGGGAATCGGAGGTGATCGCAAGATGGGCAATAGAGATGCCCCAACGAACAATGATAGAGCCTTGGTGGCACAGCA...

Protein

Download Protein FASTA

422 aa · TkA02G333080|TK1151|PROTEIN

MMTGLINCYNSLVNVELAPPVLMSELDQIHPDDVEKMDISWHIGMAVFRAKKFTQRTGRNAWGIGGDRKMGNRDAPTNNDRALVAQQFNWEDQLQALNLGDHHAANLAQIYEADEAEDQMMELQHAFMVSASTEEEKVSETSCSPSCSAKLTSYREQIDLLIRDIEDIKYDGYVLRKNQKPIREKLEAQTKDYKRVKDELYELKQTHAMAKYTINKLTAELAASNARFKNAEFNFKKFDVSSEKVEVMIENHMKWQDKQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G333080`
TK1151 ID	TkA02G333080
OH-1004 ID	LXL04_003324
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	62.000
Protein coverage (%)	TK1151 100.000 / OH-1004 23.874 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G333080`
Location	Chr02:84528046-84530913 (+)
Description	Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_003324` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0071897 DNA biosynthetic process Biological Process GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.519

Rank 1 · TkA02G333080 · TK1151

Cytoplasm0.493

Rank 2 · TkA02G333080 · TK1151

Mitochondrion0.048

Rank 3 · TkA02G333080 · TK1151

Cell membrane0.038

Rank 4 · TkA02G333080 · TK1151

Endoplasmic reticulum0.029

Rank 5 · TkA02G333080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28256CCDC17182-244 aa

PF08581Tup_N110-126 aa

PF05701WEMBL112-232 aa

PF03961FapA141-237 aa

PF08581Tup_N156-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G333080	`PF28256`	CCDC171	82	244	0.64	8.1
TkA02G333080	`PF08581`	Tup_N	110	126	0.007	17.4
TkA02G333080	`PF05701`	WEMBL	112	232	0.009	15.5
TkA02G333080	`PF03961`	FapA	141	237	2.3	8.5
TkA02G333080	`PF08581`	Tup_N	156	213	0.007	17.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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