TkA02G327730 | RubberDandelionOmics

Gene overview

TkA02G327730

Reference: TK1151 Chr: Chr02 Coordinates: 83151602-83153685 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1944 bp · TkA02G327730|TK1151|cDNA

ATGCTGTCAATCCCGGATTCTGCCACCATTGTTCTTGGTAAGCTTATTAATCTTAGCCTTATTGATAAAGTTCAGGAGATATGTTCGAAGGAGGGATTTAAGGGAGTTGAAGTCACGTATATTGGGGGTTCTTGGGTGTGGTTGGAATTCAATACTCGTACTGCTTGTGTGCGATTTAAACAGTGTGATCTCTTAAAAACCTACTTTAGCCAAATTCAAACCTTATCAAGACAGTTTACTGTGGATGATAAGGTGGTGTG...

CDS

Download CDS FASTA

1944 bp · TkA02G327730|TK1151|CDS

ATGCTGTCAATCCCGGATTCTGCCACCATTGTTCTTGGTAAGCTTATTAATCTTAGCCTTATTGATAAAGTTCAGGAGATATGTTCGAAGGAGGGATTTAAGGGAGTTGAAGTCACGTATATTGGGGGTTCTTGGGTGTGGTTGGAATTCAATACTCGTACTGCTTGTGTGCGATTTAAACAGTGTGATCTCTTAAAAACCTACTTTAGCCAAATTCAAACCTTATCAAGACAGTTTACTGTGGATGATAAGGTGGTGTG...

Protein

Download Protein FASTA

647 aa · TkA02G327730|TK1151|PROTEIN

MLSIPDSATIVLGKLINLSLIDKVQEICSKEGFKGVEVTYIGGSWVWLEFNTRTACVRFKQCDLLKTYFSQIQTLSRQFTVDDKVVWIEISGMPLESWSASAFKKVAVTWGDVVFLDSSYGGIICNGRVCLRVPSAKVISGESLVSLEGIQHVIKVRELGCWMPSLPDNSDNAIEDSEAEMGGVLSDKEREDSNSVEGSISVEDGEFVMSDNGCNYEKVERYPGIQKEQESMRKHSPAKSSRWADEVEEEERANASADDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G327730`
TK1151 ID	TkA02G327730
OH-1004 ID	LXL04_019893
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.400
Protein coverage (%)	TK1151 98.609 / OH-1004 36.807 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G327730`
Location	Chr02:83151602-83153685 (+)
Description	Similar to At1g65750: Putative ribonuclease H protein At1g65750
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019893` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0009908 flower development Biological Process GO:0009910 negative regulation of flower development Biological Process GO:0032197 retrotransposition Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0016593 Cdc73/Paf1 complex Cellular Component GO:0000993 RNA polymerase II complex binding Molecular Function GO:0003676 nucleic acid binding Molecular Function GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	ath:AT2G06210 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.664

Rank 1 · TkA02G327730 · TK1151

Nucleus0.334

Rank 2 · TkA02G327730 · TK1151

Cell membrane0.118

Rank 3 · TkA02G327730 · TK1151

Endoplasmic reticulum0.043

Rank 4 · TkA02G327730 · TK1151

Golgi apparatus0.030

Rank 5 · TkA02G327730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09130DUF1932220-252 aa

PF03372Exo_endo_phos339-551 aa

PF14529Exo_endo_phos_2432-554 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G327730	`PF09130`	DUF1932	220	252	0.096	13.3
TkA02G327730	`PF03372`	Exo_endo_phos	339	551	3.8e-05	24.3
TkA02G327730	`PF14529`	Exo_endo_phos_2	432	554	4e-06	27.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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