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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G325500
Reference: TK1151 Chr: Chr02 Coordinates: 82581841-82585929 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2597 bp · TkA02G325500|TK1151|cDNA

ATAACACTCGCACCTGGCGCACTTTATCAATCGTGTCCCTGCTATAAATACTTCATCTCCCATTTCCGTTTCCCTCCACCATCCCTTACCCCACCATCAAGTCTCTCTCCCTCCCACCAATATCACGCACAGAGAGCGAAAGTTTCATGTAATTTTAAGAGCTTTTCTGAAGAGAAGGAAGGGCGAATGTGCACGGAAGTTGAACAATGGCGGCGGTGTCACCTTCTCTGCAGGCCAATTTCTATGCCTCTTCTTCCAAG...

CDS

Download CDS FASTA

2109 bp · TkA02G325500|TK1151|CDS

ATGGCGGCGGTGTCACCTTCTCTGCAGGCCAATTTCTATGCCTCTTCTTCCAAGCTTTGCTTTCTCACATCAGATAGATTCAAACGAAGATCTTTCTGTTGCAAAAGTAAGAGCCATTCATGTATAATCAAATCAGTGATGAACAACAAAAGCATTAATGGTGACGAGGCAATCGAACCTGCAAGAATTCTTCTCGAAAGACTATTTGCCCAAACCCAAAAACTTGAAGAAAAAATAAACAAAAATTCAAGTCCACCTCA...

Protein

Download Protein FASTA

702 aa · TkA02G325500|TK1151|PROTEIN

MAAVSPSLQANFYASSSKLCFLTSDRFKRRSFCCKSKSHSCIIKSVMNNKSINGDEAIEPARILLERLFAQTQKLEEKINKNSSPPQDIELELYLGKLESDLQTALTVLRKKEEDLEAAENKMLSEYRDLNDSKMELSKREEVISDVFLRQERLQNELNLANLDLASRATEIEDLKIVIEKQDHEMMLARSALEFKENEIKIMIDELRVKTEESANFELEITKKSRALYETNEILRRQSVEIQELKETIRDKNEELEISK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G325500
TK1151 IDTkA02G325500
OH-1004 IDLXL04_015504
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G325500
LocationChr02:82581841-82585929 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32190 Required for the initiation of starch granules biosynthesis in leaf chloroplasts.
PII1: a protein involved in starch initiation that determines granule number and size in Arabidopsis chloroplast.2019 · DOI: 10.1111/nph.15356

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015504 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0010581 regulation of starch biosynthetic process Biological Process
GO:0019252 starch biosynthetic process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT4G32190
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.912
Rank 1 · TkA02G325500 · TK1151
Cytoplasm0.074
Rank 2 · TkA02G325500 · TK1151
Nucleus0.061
Rank 3 · TkA02G325500 · TK1151
Mitochondrion0.053
Rank 4 · TkA02G325500 · TK1151
Peroxisome0.039
Rank 5 · TkA02G325500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30679CCDC18_2nd75-272 aa
PF28733PII1_coiled_coil95-493 aa
PF28731PII1_C97-146 aa
PF28019HmpF99-278 aa
PF28731PII1_C170-227 aa
PF28019HmpF236-413 aa
PF28731PII1_C240-295 aa
PF28019HmpF287-454 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G325500PF30679CCDC18_2nd752729.64.9
TkA02G325500PF28733PII1_coiled_coil954935.9e-131437.7
TkA02G325500PF28731PII1_C971463e-55187.6
TkA02G325500PF28019HmpF992780.111.7
TkA02G325500PF28731PII1_C1702273e-55187.6
TkA02G325500PF28019HmpF2364130.111.7
TkA02G325500PF28731PII1_C2402953e-55187.6
TkA02G325500PF28019HmpF2874540.111.7
TkA02G325500PF28731PII1_C3964533e-55187.6
TkA02G325500PF30679CCDC18_2nd3965939.64.9
TkA02G325500PF28019HmpF4026370.111.7
TkA02G325500PF28731PII1_C4684923e-55187.6
TkA02G325500PF28731PII1_C5256953e-55187.6
TkA02G325500PF30679CCDC18_2nd5276409.64.9
TkA02G325500PF28733PII1_coiled_coil5356025.9e-131437.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H1E5Arabidopsis thalianasp|Q8H1E5|PII1_ARATH Protein involved in starch initiation 134.800%Swiss-ProtMedium

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