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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G318750
Reference: TK1151 Chr: Chr02 Coordinates: 80967150-80969970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1715 bp · TkA02G318750|TK1151|cDNA

GCGAAGAATGGAGTGGTCTATATCATAATTTAAGGACCAGGATTCAAGTAAAACGCTCAACTCGATTCCTACTTCCGAATACCACAATGGCTTTATCTCACAGTTTTTTAGCCATACACTTCACACCTATTCAGAACCCAGGTGTTCTTATTGCCAATCACTGCAATCGAAAACTCCATAGAACAGTCAAGTTTGACTCTTTGAAACCTAAGGCCACAGGAGACAAGGAAGCAAAACCTAAAACAAAGAGTGTCATATGT...

CDS

Download CDS FASTA

369 bp · TkA02G318750|TK1151|CDS

ATGGCTTTATCTCACAGTTTTTTAGCCATACACTTCACACCTATTCAGAACCCAGGTGTTCTTATTGCCAATCACTGCAATCGAAAACTCCATAGAACAGTCAAGTTTGACTCTTTGAAACCTAAGGCCACAGGAGACAAGGAAGCAAAACCTAAAACAAAGAGTGTCATATGTACCGATTGTGATGGAAATGGTGCGGTTCAATGTTCACAATGCAAAGGTGTTGGTATTAACCCCGAAGATTTCTTTAACGGACAATT...

Protein

Download Protein FASTA

122 aa · TkA02G318750|TK1151|PROTEIN

MALSHSFLAIHFTPIQNPGVLIANHCNRKLHRTVKFDSLKPKATGDKEAKPKTKSVICTDCDGNGAVQCSQCKGVGINPEDFFNGQFKAGDNCWLCGGRKEMLCGGCNGAGFVGGFLSGFDH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G318750
TK1151 IDTkA02G318750
OH-1004 IDLXL04_015536
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G318750
LocationChr02:80967150-80969970 (-)
DescriptionSimilar to BSD2: Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47650 Chloroplast chaperone required for RuBisCo biogenesis and translational regulation of the RuBisCo large subunit (RbcL).
Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2.2017 · DOI: 10.1126/science.aap9221

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015536 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0110102 ribulose bisphosphate carboxylase complex assembly Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0101031 protein folding chaperone complex Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0044183 protein folding chaperone Molecular Function
KEGG gene cross-reference
ath:AT3G47650
zma:732793
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975
Rank 1 · TkA02G318750 · TK1151
Mitochondrion0.031
Rank 2 · TkA02G318750 · TK1151
Nucleus0.019
Rank 3 · TkA02G318750 · TK1151
Cytoplasm0.014
Rank 4 · TkA02G318750 · TK1151
Cell membrane0.010
Rank 5 · TkA02G318750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25112zf-AtTam3718-38 aa
PF23733GRXCR1-2_C25-27 aa
PF30758Orange_C35-76 aa
PF15777Anti-TRAP43-68 aa
PF21002TMEM106_N45-82 aa
PF00684DnaJ_CXXCXGXG49-67 aa
PF23733GRXCR1-2_C52-72 aa
PF25436BSD2_CRD54-121 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G318750PF25112zf-AtTam3718380.01816.5
TkA02G318750PF23733GRXCR1-2_C25270.02215.4
TkA02G318750PF30758Orange_C35760.01516.3
TkA02G318750PF15777Anti-TRAP43680.8610.4
TkA02G318750PF21002TMEM106_N45821.410.3
TkA02G318750PF00684DnaJ_CXXCXGXG49670.0003921.4
TkA02G318750PF23733GRXCR1-2_C52720.02215.4
TkA02G318750PF25436BSD2_CRD541211.6e-36125.0
TkA02G318750PF25433DUF789556775.78.1
TkA02G318750PF00684DnaJ_CXXCXGXG581110.0003921.4
TkA02G318750PF30758Orange_C581110.01516.3
TkA02G318750PF25112zf-AtTam3758740.01816.5
TkA02G318750PF15777Anti-TRAP671020.8610.4
TkA02G318750PF25112zf-AtTam37911140.01816.5
TkA02G318750PF25433DUF7895921135.78.1
TkA02G318750PF23733GRXCR1-2_C931100.02215.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SN73Arabidopsis thalianasp|Q9SN73|BSD2_ARATH Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic45.300%Swiss-ProtMedium

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