TkA02G271320 | RubberDandelionOmics

Gene overview

TkA02G271320

Reference: TK1151 Chr: Chr02 Coordinates: 69347379-69348950 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1302 bp · TkA02G271320|TK1151|cDNA

ATGTTTACCGCTGGCAAAACAGATGGAGCGGGAGAATGTAGTGGCAAACGCCGCCAGCGACATTCTCCAGAGGCGTGGGTATACCGCTCGGCGTTCTGGCTTTTTTCAGGATGCAGCTTTTCATTTGTATGCAGCTTTTCATTTGTATTTATTCTAAATCACGGGAAAGGGTTTAGAAAAATGAGGAGATACAATAAAAATACTTCATCAAATCGTAGAGAGTCTAGCTCTTCTTCGCAACAGAACGAAGATAGCCCTCC...

CDS

Download CDS FASTA

1302 bp · TkA02G271320|TK1151|CDS

ATGTTTACCGCTGGCAAAACAGATGGAGCGGGAGAATGTAGTGGCAAACGCCGCCAGCGACATTCTCCAGAGGCGTGGGTATACCGCTCGGCGTTCTGGCTTTTTTCAGGATGCAGCTTTTCATTTGTATGCAGCTTTTCATTTGTATTTATTCTAAATCACGGGAAAGGGTTTAGAAAAATGAGGAGATACAATAAAAATACTTCATCAAATCGTAGAGAGTCTAGCTCTTCTTCGCAACAGAACGAAGATAGCCCTCC...

Protein

Download Protein FASTA

433 aa · TkA02G271320|TK1151|PROTEIN

MFTAGKTDGAGECSGKRRQRHSPEAWVYRSAFWLFSGCSFSFVCSFSFVFILNHGKGFRKMRRYNKNTSSNRRESSSSSQQNEDSPPQQEGYRPTFDPAHYQQQLAFQAWMQTQPQYQYQPPQYPTPQYPTPQYQIQTPSPQYQTPSPQYLTPQYQFQTPSPLSHTSSPQFEPASPFTEESTQEVLETQEQASDSEESDEEEVVRLKGKAVRKNWTNLEEEVLAQAWCGISEDARYGNDQNAKQFWTHVTRLFNKLLGKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G271320`
TK1151 ID	TkA02G271320
OH-1004 ID	LXL04_014856
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.800
Protein coverage (%)	TK1151 87.760 / OH-1004 32.246 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G271320`
Location	Chr02:69347379-69348950 (-)
Description	Similar to At5g03795: Probable glycosyltransferase At5g03795
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014856` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009101 glycoprotein biosynthetic process Biological Process GO:0071555 cell wall organization Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005634 nucleus Cellular Component GO:0016757 glycosyltransferase activity Molecular Function
KEGG gene cross-reference	ath:AT5G03795 ath:AT5G11130 ath:AT5G20260 ath:AT5G25310 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.936

Rank 1 · TkA02G271320 · TK1151

Cytoplasm0.187

Rank 2 · TkA02G271320 · TK1151

Mitochondrion0.019

Rank 3 · TkA02G271320 · TK1151

Cell membrane0.018

Rank 4 · TkA02G271320 · TK1151

Endoplasmic reticulum0.013

Rank 5 · TkA02G271320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13837Myb_DNA-bind_462-76 aa

PF13837Myb_DNA-bind_4212-286 aa

PF13873Myb_DNA-bind_5239-281 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G271320	`PF13837`	Myb_DNA-bind_4	62	76	1.4e-06	29.3
TkA02G271320	`PF13837`	Myb_DNA-bind_4	212	286	1.4e-06	29.3
TkA02G271320	`PF13873`	Myb_DNA-bind_5	239	281	0.12	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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