TkA02G262420 | RubberDandelionOmics

Gene overview

TkA02G262420

Reference: TK1151 Chr: Chr02 Coordinates: 67181369-67186892 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2378 bp · TkA02G262420|TK1151|cDNA

GGCTAACCCAAGCGTTCCACACTAGGATCGGAATCTGTCTCGTGTCCTGACTCCTCCGCCACCCATCGCCACCTACTACCTCCCTGTCATATATCTCTCTCCGCCGCCGCCGAGTTAAAGAGAAAGAAAGAGTGATCGGAGAATGGCGTCGAAGAGGTTCATTGTAGAGGTGGAGCCGGCTATTGAGGCGAAAGATGGAAAGCCGTCGATGGGACCTGTGTACCGTAGTGTATTTGCTAAAGATGGTTTTCCGGCTCCAA...

CDS

Download CDS FASTA

1980 bp · TkA02G262420|TK1151|CDS

ATGGCGTCGAAGAGGTTCATTGTAGAGGTGGAGCCGGCTATTGAGGCGAAAGATGGAAAGCCGTCGATGGGACCTGTGTACCGTAGTGTATTTGCTAAAGATGGTTTTCCGGCTCCAATCGATGGTTTAGATTCGTGTTGGGACGTTTTCCGCATCTCAGTGGAAAAATACCCCAATAATCGAATGCTTGGTACCCGTGAGTTTGTAGATGGAAAGCATGGAAAATACGTGTGGTTAACTTACAAACAAGTATATGACAA...

Protein

Download Protein FASTA

659 aa · TkA02G262420|TK1151|PROTEIN

MASKRFIVEVEPAIEAKDGKPSMGPVYRSVFAKDGFPAPIDGLDSCWDVFRISVEKYPNNRMLGTREFVDGKHGKYVWLTYKQVYDKVVRVGNSIRACGVEQGGRCGIYGANCAEWVMSMEACNAHGLHCVPLYDTLGHGAVEFIICHAEVTLAFVEAKKLPEVLKTFPKAGEYLKTIVSFGKVTSEQKEQFENFGVAIYSWDEFLALGDGKEFNLPVKKKSDICTIMYTSGTTGDPKGVLISNNSIVTLIAGVQRLLGC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G262420`
TK1151 ID	TkA02G262420
OH-1004 ID	LXL04_005755
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.200
Protein coverage (%)	TK1151 99.848 / OH-1004 99.705 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G262420

Location Chr02:67181369-67186892 (-)

Description Similar to LACS4: Long chain acyl-CoA synthetase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23850`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	No verified direct reference in this release
`At4g11030`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	No verified direct reference in this release
`At1g64400`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	No verified direct reference in this release
`At1g49430`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	The acyl-CoA synthetase encoded by LACS2 is essential for normal cuticle development in Arabidopsis.2004 · DOI: 10.1105/tpc.017608 A permeable cuticle in Arabidopsis leads to a strong resistance to Botrytis cinerea.2007 · DOI: 10.1038/sj.emboj.7601658 Mutations in LACS2, a long-chain acyl-coenzyme A synthetase, enhance susceptibility to avirulent Pseudomonas syringae but confer resistance to Botrytis cinerea in Arabidopsis.2007 · DOI: 10.1104/pp.106.094318

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005755 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0010311 lateral root formation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0080024 indolebutyric acid metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G49430

ath:AT1G64400

ath:AT4G11030

ath:AT4G23850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.398

Rank 1 · TkA02G262420 · TK1151

Endoplasmic reticulum0.304

Rank 2 · TkA02G262420 · TK1151

Mitochondrion0.120

Rank 3 · TkA02G262420 · TK1151

Peroxisome0.111

Rank 4 · TkA02G262420 · TK1151

Cell membrane0.104

Rank 5 · TkA02G262420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501AMP-binding55-482 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G262420	`PF00501`	AMP-binding	55	482	1.4e-81	275.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9T0A0`	Arabidopsis thaliana	sp\|Q9T0A0\|LACS4_ARATH Long chain acyl-CoA synthetase 4	73.400%	Swiss-Prot	High
`Q9T009`	Arabidopsis thaliana	sp\|Q9T009\|LACS5_ARATH Long chain acyl-CoA synthetase 5	70.800%	Swiss-Prot	High
`Q9C7W4`	Arabidopsis thaliana	sp\|Q9C7W4\|LACS3_ARATH Long chain acyl-CoA synthetase 3	68.400%	Swiss-Prot	High
`Q9XIA9`	Arabidopsis thaliana	sp\|Q9XIA9\|LACS2_ARATH Long chain acyl-CoA synthetase 2	54.300%	Swiss-Prot	High

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