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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G261550
Reference: TK1151 Chr: Chr02 Coordinates: 66780183-66783182 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1953 bp · TkA02G261550|TK1151|cDNA

CACAGTTAAAACGAACGCTTGAACAAAAACCCTAAACCCCCAAAAATTGGGGGCTAATCAAGAAATACAGAAACCCTAGAAAATAAATCACATGGAGAAATCAGTGGCAACTTTAGATAATGGGGCAATATGCTCTTCATGGAACTACTGTGGCCAAAGATTGGCTACTGGTATGATCGATGGAACAATTGCTATCTACGACACTAGTGATCCAGCTTCTTCCACATTCACCTCGACTTTTAAATTCAAGGTTAGCGAGG...

CDS

Download CDS FASTA

978 bp · TkA02G261550|TK1151|CDS

ATGGAGAAATCAGTGGCAACTTTAGATAATGGGGCAATATGCTCTTCATGGAACTACTGTGGCCAAAGATTGGCTACTGGTATGATCGATGGAACAATTGCTATCTACGACACTAGTGATCCAGCTTCTTCCACATTCACCTCGACTTTTAAATTCAAGGTTAGCGAGGGAAGCATTGTAAAGGCTGCATGGGTTCCCCCGGAGTATGGCGATGCAGTTGCGTGCATATGTTCCAATGGAAGTTTATCAATCTGGGAAGA...

Protein

Download Protein FASTA

325 aa · TkA02G261550|TK1151|PROTEIN

MEKSVATLDNGAICSSWNYCGQRLATGMIDGTIAIYDTSDPASSTFTSTFKFKVSEGSIVKAAWVPPEYGDAVACICSNGSLSIWEEIAEDSEPVQWKQRKTFAGSSNQVLDAQFGNSHPSLKLTVAYSNGLVKVYEILDPMDLKNWQLQAEFQNVTDSITKFGNTSCLSASISWNPQRSDTCSASFLLGLNSDTPQLNSPKVWEFDQDHQRWLPVAELADTDDKGDQVYSVAWAPNIGRPFELMAVASVKSISIWQMAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G261550
TK1151 IDTkA02G261550
OH-1004 IDLXL04_029539
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G261550
LocationChr02:66780183-66783182 (+)
DescriptionSimilar to SEH1: Protein SEH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64350 Required for proper export of mRNAs from the nucleus to the cytoplasm.
Putative members of the Arabidopsis Nup107-160 nuclear pore sub-complex contribute to pathogen defense.2012 · DOI: 10.1111/j.1365-313x.2012.04928.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029539 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006999 nuclear pore organization Biological Process
GO:0007080 mitotic metaphase chromosome alignment Biological Process
GO:0015031 protein transport Biological Process
GO:0031669 cellular response to nutrient levels Biological Process
GO:0034198 cellular response to amino acid starvation Biological Process
GO:0051028 mRNA transport Biological Process
GO:0051301 cell division Biological Process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore Biological Process
GO:1904263 positive regulation of TORC1 signaling Biological Process
GO:0000776 kinetochore Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005765 lysosomal membrane Cellular Component
KEGG gene cross-reference
ath:AT1G64350
xla:444365
xla:734650
xtr:496570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.618
Rank 1 · TkA02G261550 · TK1151
Nucleus0.519
Rank 2 · TkA02G261550 · TK1151
Lysosome / Vacuole0.051
Rank 3 · TkA02G261550 · TK1151
Cell membrane0.049
Rank 4 · TkA02G261550 · TK1151
Endoplasmic reticulum0.042
Rank 5 · TkA02G261550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25172Beta-prop_WDR3_2nd5-41 aa
PF16755Beta-prop_NUP159_NUP2146-47 aa
PF23414Beta-prop_EML_27-114 aa
PF23775Beta-prop_RIG_2nd8-140 aa
PF23381Beta-prop_IFT122_1st9-136 aa
PF24805EIF3I10-55 aa
PF00400WD4012-37 aa
PF25047Beta-prop_TEP1_2nd12-90 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G261550PF25172Beta-prop_WDR3_2nd5410.001418.6
TkA02G261550PF16755Beta-prop_NUP159_NUP2146470.006816.4
TkA02G261550PF23414Beta-prop_EML_271149.4e-0935.7
TkA02G261550PF23775Beta-prop_RIG_2nd81401.7e-0628.4
TkA02G261550PF23381Beta-prop_IFT122_1st91362.3e-1454.1
TkA02G261550PF24805EIF3I10550.0001122.2
TkA02G261550PF00400WD4012372.4e-1350.6
TkA02G261550PF25047Beta-prop_TEP1_2nd12901.8e-0524.8
TkA02G261550PF24807WD40_CDC20-Fz13862.5e-0937.6
TkA02G261550PF24817WD40_WDHD1_1st13834.2e-0936.7
TkA02G261550PF23389Beta-prop_WDR19_1st13440.01115.5
TkA02G261550PF23409Beta-prop_EML14440.03614.3
TkA02G261550PF25174Beta-prop_THOC316861.3e-1454.6
TkA02G261550PF12894ANAPC4_WD4016402.3e-1041.3
TkA02G261550PF25175Beta-prop_WDR5161161e-0732.2
TkA02G261550PF24105Beta-prop_CAF1B_HIR116810.0001521.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93VR9Arabidopsis thalianasp|Q93VR9|SEH1_ARATH Protein SEH159.900%Swiss-ProtHigh

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