RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G261290
Reference: TK1151 Chr: Chr02 Coordinates: 66684266-66684712 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

447 bp · TkA02G261290|TK1151|cDNA

ATGCTTCAACCAAATGTAAACATCCAACCAGACAATTCAACATTGGCTATTGTTATATCCGTTTGTTCTCAATTAGGGGATTTGAGATTCAGATCTTGGATAAATGACATTTTAAAGAAGCAAATGGGGGTCAAGATGGATGATCATTTGGGTGCGGCATTAGTCGAATTTTATGCAAAATTTAGGCATGTTGAAAAAGCTTACAGTTTGTTTTGTGGCTTGAAAAAGAAAGAGGTTGGTGTTTATACGACAATGATATT...

CDS

Download CDS FASTA

447 bp · TkA02G261290|TK1151|CDS

ATGCTTCAACCAAATGTAAACATCCAACCAGACAATTCAACATTGGCTATTGTTATATCCGTTTGTTCTCAATTAGGGGATTTGAGATTCAGATCTTGGATAAATGACATTTTAAAGAAGCAAATGGGGGTCAAGATGGATGATCATTTGGGTGCGGCATTAGTCGAATTTTATGCAAAATTTAGGCATGTTGAAAAAGCTTACAGTTTGTTTTGTGGCTTGAAAAAGAAAGAGGTTGGTGTTTATACGACAATGATATT...

Protein

Download Protein FASTA

148 aa · TkA02G261290|TK1151|PROTEIN

MLQPNVNIQPDNSTLAIVISVCSQLGDLRFRSWINDILKKQMGVKMDDHLGAALVEFYAKFRHVEKAYSLFCGLKKKEVGVYTTMILACGRNGWKHYAIKLFMEMLEANICPNLATFSGLLSALNHWGIVEQSYHGFGYGQSYLELRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G261290
TK1151 IDTkA02G261290
OH-1004 IDLXL04_029546
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)83.900
Protein coverage (%)TK1151 96.622 / OH-1004 29.485
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G261290
LocationChr02:66684266-66684712 (+)
DescriptionSimilar to PCMP-E6: Pentatricopeptide repeat-containing protein At4g22760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18970 Pentatricopeptide repeat-containing protein At3g18970. No verified direct reference in this release
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release
At5g40410 Pentatricopeptide repeat-containing protein At5g40410, mitochondrial. No verified direct reference in this release
At5g06540 Pentatricopeptide repeat-containing protein At5g06540. No verified direct reference in this release
At5g15340 Pentatricopeptide repeat-containing protein At5g15340, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029546 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G45350
ath:AT3G21470
ath:AT4G22760
ath:AT5G37570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.732
Rank 1 · TkA02G261290 · TK1151
Plastid0.102
Rank 2 · TkA02G261290 · TK1151
Cytoplasm0.041
Rank 3 · TkA02G261290 · TK1151
Nucleus0.036
Rank 4 · TkA02G261290 · TK1151
Peroxisome0.011
Rank 5 · TkA02G261290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_27-23 aa
PF13812PPR_37-40 aa
PF12854PPR_17-22 aa
PF23276TPR_2415-79 aa
PF01535PPR17-28 aa
PF29070MSC6_N28-69 aa
PF19131DUF581429-103 aa
PF13812PPR_352-78 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G261290PF13041PPR_27232.4e-1247.5
TkA02G261290PF13812PPR_37401.6e-0732.0
TkA02G261290PF12854PPR_17220.0002621.4
TkA02G261290PF23276TPR_2415790.006117.2
TkA02G261290PF01535PPR17283.8e-1040.0
TkA02G261290PF29070MSC6_N28690.0001621.6
TkA02G261290PF19131DUF5814291030.003917.6
TkA02G261290PF13812PPR_352781.6e-0732.0
TkA02G261290PF13041PPR_254792.4e-1247.5
TkA02G261290PF01535PPR54783.8e-1040.0
TkA02G261290PF12854PPR_158710.0002621.4
TkA02G261290PF17177PPR_long641340.0005720.0
TkA02G261290PF13041PPR_2791242.4e-1247.5
TkA02G261290PF13812PPR_3791241.6e-0732.0
TkA02G261290PF01535PPR811103.8e-1040.0
TkA02G261290PF12854PPR_1811050.0002621.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJ69Arabidopsis thalianasp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g1897034.600%Swiss-ProtMedium
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial31.500%Swiss-ProtMedium
Q9FND6Arabidopsis thalianasp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial28.800%Swiss-ProtLow
Q9FG16Arabidopsis thalianasp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g0654032.500%Swiss-ProtMedium
Q9LXE8Arabidopsis thalianasp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340, mitochondrial30.000%Swiss-ProtMedium

JBrowse

View in Genome Browser