TkA02G222410 | RubberDandelionOmics

Gene overview

TkA02G222410

Reference: TK1151 Chr: Chr02 Coordinates: 57657480-57658308 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

411 bp · TkA02G222410|TK1151|cDNA

ATGCCGTTTATCGAAGCTCTTGGACAATTCTCTTATCGTGTTGGGGCTGGGAATTTTTGCTTAATACATGTGAGCCTTGTGCCGGTTTTAAATGTTGTTGGTGAACAGAAAACAAAACCAACACAAAATGAGGCTGCTTTGTGGGCTGTTAACAAGTGGGACAAAAGGGCTGCTATCCGGGATGAGCAGGAGTTGGACAGAATGGTTAGAAAAAACTGCCACCGAGGGCAGTTTGGTCATTTCCGACTGATGCAGTTTTT...

CDS

Download CDS FASTA

411 bp · TkA02G222410|TK1151|CDS

ATGCCGTTTATCGAAGCTCTTGGACAATTCTCTTATCGTGTTGGGGCTGGGAATTTTTGCTTAATACATGTGAGCCTTGTGCCGGTTTTAAATGTTGTTGGTGAACAGAAAACAAAACCAACACAAAATGAGGCTGCTTTGTGGGCTGTTAACAAGTGGGACAAAAGGGCTGCTATCCGGGATGAGCAGGAGTTGGACAGAATGGTTAGAAAAAACTGCCACCGAGGGCAGTTTGGTCATTTCCGACTGATGCAGTTTTT...

Protein

Download Protein FASTA

136 aa · TkA02G222410|TK1151|PROTEIN

MPFIEALGQFSYRVGAGNFCLIHVSLVPVLNVVGEQKTKPTQNEAALWAVNKWDKRAAIRDEQELDRMVRKNCHRGQFGHFRLMQFFSCRGPDGTAFWITFGNSSMSSALGSTLKEISIAGGIFGKQPLFGAVWIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G222410`
TK1151 ID	TkA02G222410
OH-1004 ID	LXL04_023437
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.800
Protein coverage (%)	TK1151 55.147 / OH-1004 11.377 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G222410`
Location	Chr02:57657480-57658308 (+)
Description	Similar to Ctps1: CTP synthase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023437` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006241 CTP biosynthetic process Biological Process GO:0008654 phospholipid biosynthetic process Biological Process GO:0019856 pyrimidine nucleobase biosynthetic process Biological Process GO:0032480 negative regulation of type I interferon production Biological Process GO:0044210 'de novo' CTP biosynthetic process Biological Process GO:0140861 DNA repair-dependent chromatin remodeling Biological Process GO:1902340 negative regulation of chromosome condensation Biological Process GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0097268 cytoophidium Cellular Component
KEGG gene cross-reference	cge:100689101 ddi:DDB_G0280567 mmu:51797 xla:444477 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.325

Rank 1 · TkA02G222410 · TK1151

Cytoplasm0.302

Rank 2 · TkA02G222410 · TK1151

Nucleus0.201

Rank 3 · TkA02G222410 · TK1151

Plastid0.139

Rank 4 · TkA02G222410 · TK1151

Cell membrane0.068

Rank 5 · TkA02G222410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06418CTP_synth_N1-44 aa

PF06744IcmF_C38-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G222410	`PF06418`	CTP_synth_N	1	44	1.3e-09	38.6
TkA02G222410	`PF06744`	IcmF_C	38	106	0.17	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card