RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G208740
Reference: TK1151 Chr: Chr02 Coordinates: 53297644-53302313 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3436 bp · TkA02G208740|TK1151|cDNA

CTTACCCACCCGGCCACCCCCAAGCCTGGTTTCCTATAGTAGTCCATTTTACAATCTCTCTGTGTTCACCACCTCTCTCCCACACATTCTCTCTCATCCAGCATACACATACATCCATCTCTCCTTCTGGTTTTATATAATACATATATACATAGTTGCTTAGTCGTCCGTGGTTTGCAATGGCACCGACCTTCAAAGACCTCCAGCTGACGGGGTTGGTGGCCGTGATAGTGGCGGCGGCCGTGATTCGTTGGCGATCG...

CDS

Download CDS FASTA

2853 bp · TkA02G208740|TK1151|CDS

ATGAAGAGAATTCAGGTGAAAGTTACAGGGATGACATGTGCTGCGTGTTCGAATTCCGTTGAAGGAGCTCTTATGAGTTTAAATGGCGTTATAAGTGCTTCTGTCGCCTTGTTGCAGCACAAAGCCGATGTAGTCTTCGATCCCAATTTGGTCAAGGAAGAGGATGTGAAGAATGCAATAGAAGATGCAGGATTTGAAGCAGAGATTCTAGAAGAAAAGAGTAGTTGTCGCACCAAGCCACAAGGAAACCTGGTAGGGCA...

Protein

Download Protein FASTA

950 aa · TkA02G208740|TK1151|PROTEIN

MKRIQVKVTGMTCAACSNSVEGALMSLNGVISASVALLQHKADVVFDPNLVKEEDVKNAIEDAGFEAEILEEKSSCRTKPQGNLVGQFTIGGMTCAACVNSVEGIIRKLPGVKRATVALPTSLGEVEYDPLIISKEEIVNAIEDAGFDATFVQSSEQDKIILGVVGVSNELDAQTLEGILCKLKGVRQFGFNRVSRELDVLFDTQILGPRSLVDALVTESSGRFQMHVKNPYTRMVSQDEEESSKMYKLFSSSLFLSFPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G208740
TK1151 IDTkA02G208740
OH-1004 IDLXL04_015815
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 93.046
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G208740
LocationChr02:53297644-53302313 (+)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44790 Involved in copper import into the cell. No verified direct reference in this release
At1g63440 Involved in copper import into the cell.
The Arabidopsis heavy metal P-type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots.2006 · DOI: 10.1111/j.1365-313x.2005.02601.x

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0665800 Metal efflux transporter that may play a role in detoxification of heavy metals, such as zinc, copper, lead and cadmium, especially in the shoots.
Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein.2007 · DOI: 10.1104/pp.107.102236
Os04g0556000 Copper (Cu) transporter that plays an essential role in promoting translocation of Cu from roots to shoots.
A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice.2013 · DOI: 10.1104/pp.113.226225
Os02g0196600 Copper (Cu) transporter that mediates Cu transport in root vacuoles.
A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.2016 · DOI: 10.1038/ncomms12138
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015815 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009636 response to toxic substance Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010273 detoxification of copper ion Biological Process
GO:0046688 response to copper ion Biological Process
GO:0055070 copper ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0071280 cellular response to copper ion Biological Process
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT1G63440
ath:AT5G44790
dosa:Os04g0556000
dosa:Os06g0665800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.405
Rank 1 · TkA02G208740 · TK1151
Golgi apparatus0.151
Rank 2 · TkA02G208740 · TK1151
Cytoplasm0.150
Rank 3 · TkA02G208740 · TK1151
Cell membrane0.136
Rank 4 · TkA02G208740 · TK1151
Mitochondrion0.113
Rank 5 · TkA02G208740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403HMA6-66 aa
PF19803DUF62869-63 aa
PF03793PASTA52-83 aa
PF18152DAHP_snth_FXD54-69 aa
PF00403HMA88-148 aa
PF19803DUF628693-119 aa
PF03793PASTA134-158 aa
PF18152DAHP_snth_FXD136-178 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G208740PF00403HMA6662.5e-33115.0
TkA02G208740PF19803DUF62869630.00518.0
TkA02G208740PF03793PASTA52830.1113.1
TkA02G208740PF18152DAHP_snth_FXD54690.212.2
TkA02G208740PF00403HMA881482.5e-33115.0
TkA02G208740PF19803DUF6286931190.00518.0
TkA02G208740PF03793PASTA1341580.1113.1
TkA02G208740PF18152DAHP_snth_FXD1361780.212.2
TkA02G208740PF00403HMA1742162.5e-33115.0
TkA02G208740PF09323DUF19802352704.08.6
TkA02G208740PF20532DUF67472452636.28.2
TkA02G208740PF20532DUF67473013486.28.2
TkA02G208740PF00122E1-E2_ATPase4024943.1e-2382.2
TkA02G208740PF03793PASTA4164290.1113.1
TkA02G208740PF09323DUF19804975234.08.6
TkA02G208740PF09323DUF19805565854.08.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7J8Arabidopsis thalianasp|Q9S7J8|HMA7_ARATH Copper-transporting ATPase RAN174.800%Swiss-ProtHigh
Q9SH30Arabidopsis thalianasp|Q9SH30|HMA5_ARATH Probable copper-transporting ATPase HMA549.300%Swiss-ProtMedium
A0A0P0X004Oryza sativa subsp. japonicasp|A0A0P0X004|HMA9_ORYSJ Cation-transporting ATPase HMA568.900%Swiss-ProtHigh
A3AWA4Oryza sativa subsp. japonicasp|A3AWA4|HMA5_ORYSJ Copper-transporting ATPase HMA550.200%Swiss-ProtHigh
Q6H7M3Oryza sativa subsp. japonicasp|Q6H7M3|HMA4_ORYSJ Copper-transporting ATPase HMA448.800%Swiss-ProtMedium

JBrowse

View in Genome Browser