TkA02G192970 | RubberDandelionOmics

Gene overview

TkA02G192970

Reference: TK1151 Chr: Chr02 Coordinates: 49463621-49467998 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3316 bp · TkA02G192970|TK1151|cDNA

TTAAGGTCTTAGTGAAGCCCTAAAACAGAAACACGGTTTGTGGATTAATTCACGCCACATACAACGAGTTCAGAGTTCAGACAACAACCGACTATAACGAGCCTCTATGAACGTTTCTGTAAAAGGAAAAATTGGCACCCTTTGAGTTTGAATCCTGAAGAAGTAAACAAGGGTGAAAAGATACAAATTCATCAAATAATCGAACCAAGAAAAATGAATTTAATCAGGATCGCGGACCAGAAGAAATCGGAACTCCAAAA...

CDS

Download CDS FASTA

2940 bp · TkA02G192970|TK1151|CDS

ATGAATTTAATCAGGATCGCGGACCAGAAGAAATCGGAACTCCAAAAGGAAAGAATGCGATCGTCGTCAGAGAACAATCGAGGTTTAAACAGTCGCTTCTTCACTCTTCGTAGCCGCCTTAATACTGCTCTGGCCCTTGGTTTCAGAAAGGATGAAGGAGGAAGGAGATGGTGTTGTACAGATGTGGAGACACAAAGGCATGTTGTTCGCTCCATTGATGCTTTTCTTGATTGTATATCCAGTGACACCTCACAACACCC...

Protein

Download Protein FASTA

979 aa · TkA02G192970|TK1151|PROTEIN

MNLIRIADQKKSELQKERMRSSSENNRGLNSRFFTLRSRLNTALALGFRKDEGGRRWCCTDVETQRHVVRSIDAFLDCISSDTSQHPLVKESLADIVPALGTTLVQKNETAMKVASKVFVRMVNVVPTSVLESLVLDIIHPLSSSLSSSHVPVVISCAIALNLILSSLSSKKDKQVWKILEETETIHNIIHHINGSNNNKPSEFFLETISLLSKILFRYPSSRFRVWNDARLMEVLDFLIHEPIFSVKAAVLHLNGAKKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G192970`
TK1151 ID	TkA02G192970
OH-1004 ID	LXL04_016092
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 98.468 / OH-1004 97.472 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G192970

Location Chr02:49463621-49467998 (-)

Description Similar to At1g04390: BTB/POZ domain-containing protein At1g04390

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04390`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016092 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G04390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.473

Rank 1 · TkA02G192970 · TK1151

Cytoplasm0.419

Rank 2 · TkA02G192970 · TK1151

Cell membrane0.083

Rank 3 · TkA02G192970 · TK1151

Endoplasmic reticulum0.066

Rank 4 · TkA02G192970 · TK1151

Mitochondrion0.058

Rank 5 · TkA02G192970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03224V-ATPase_H_N98-196 aa

PF26522ARM_6149-257 aa

PF03224V-ATPase_H_N473-559 aa

PF00651BTB665-754 aa

PF21536BTB_KLHL33711-737 aa

PF00651BTB806-863 aa

PF21536BTB_KLHL33826-862 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G192970	`PF03224`	V-ATPase_H_N	98	196	0.069	13.3
TkA02G192970	`PF26522`	ARM_6	149	257	8.2e-37	126.5
TkA02G192970	`PF03224`	V-ATPase_H_N	473	559	0.069	13.3
TkA02G192970	`PF00651`	BTB	665	754	8e-13	49.3
TkA02G192970	`PF21536`	BTB_KLHL33	711	737	7e-05	23.3
TkA02G192970	`PF00651`	BTB	806	863	8e-13	49.3
TkA02G192970	`PF21536`	BTB_KLHL33	826	862	7e-05	23.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93820`	Arabidopsis thaliana	sp\|P93820\|Y1439_ARATH BTB/POZ domain-containing protein At1g04390	40.000%	Swiss-Prot	Medium

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