TkA02G180050 | RubberDandelionOmics

Gene overview

TkA02G180050

Reference: TK1151 Chr: Chr02 Coordinates: 46301287-46305375 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2142 bp · TkA02G180050|TK1151|cDNA

ATGGATGAAAGTAGCGTCCGACTCGCTACCTCCCGAATTCTCTCGACACATCTCCGCTTCCACCCCTTCACCCACTCTCTTGCTCGGCAACTCACGGATCGATTGCCGCAGTTCCAAGGAATTTTAGACCACACAATTCTCAATTCTTGTCCTACGGTTTTTATGCCACAAAATTCTCAATTACAACTATCGACCATGGAAATCAGCTCTCCAATGGAGAATCCGTTCCAAATGTCACCAATAGAGACGCAGCTGATGAC...

CDS

Download CDS FASTA

516 bp · TkA02G180050|TK1151|CDS

ATGGATGAAAGTAGCGTCCGACTCGCTACCTCCCGAATTCTCTCGACACATCTCCGCTTCCACCCCTTCACCCACTCTCTTGCTCGGCAACTCACGGATCGATTGCCGCAGTTCCAAGGAATTTTAGACCACACAATTCTCAATTCTTGTCCTACGGTTTTTATGCCACAAAATTCTCAATTACAACTATCGACCATGGAAATCAGCTCTCCAATGGAGAATCCGTTCCAAATGTCACCAATAGAGACGCAGCTGATGAC...

Protein

Download Protein FASTA

171 aa · TkA02G180050|TK1151|PROTEIN

MDESSVRLATSRILSTHLRFHPFTHSLARQLTDRLPQFQGILDHTILNSCPTVFMPQNSQLQLSTMEISSPMENPFQMSPIETQLMTIRASYPSLQLLPLLHQLWRKTSSTFQVLRNLKKNREKISLFFGFNVTEEQSQAGIIVRLTSATQSKFKLLYFEQDNGGGYNLAL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G180050`
TK1151 ID	TkA02G180050
OH-1004 ID	LXL04_016177
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 98.295 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G180050

Location Chr02:46301287-46305375 (-)

Description Similar to ATJ15: Chaperone protein dnaJ 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68370`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016177 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0008092 cytoskeletal protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G24120

ath:AT1G59980

ath:AT1G68370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.516

Rank 1 · TkA02G180050 · TK1151

Cytoplasm0.367

Rank 2 · TkA02G180050 · TK1151

Mitochondrion0.107

Rank 3 · TkA02G180050 · TK1151

Cell membrane0.083

Rank 4 · TkA02G180050 · TK1151

Endoplasmic reticulum0.068

Rank 5 · TkA02G180050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11214Med223-46 aa

PF09436DUF201642-62 aa

PF11214Med2107-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G180050	`PF11214`	Med2	23	46	0.047	14.6
TkA02G180050	`PF09436`	DUF2016	42	62	0.2	12.1
TkA02G180050	`PF11214`	Med2	107	137	0.047	14.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSY2`	Arabidopsis thaliana	sp\|Q9ZSY2\|DNJ15_ARATH Chaperone protein dnaJ 15	55.800%	Swiss-Prot	Low

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