TkA02G177370 | RubberDandelionOmics

Gene overview

TkA02G177370

Reference: TK1151 Chr: Chr02 Coordinates: 45654219-45656707 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

543 bp · TkA02G177370|TK1151|cDNA

ATGGAAGATAGACCAAGAGATCCTGCAAATTGGAGTGAAATTACACATGTAGATGCTCTTTCTATTCCAGTCATTGCCAATGATGATGTATTCGAATACCAAGATTTTCAGAACATTCGAACTGTTACAGGGACATCGTCAGTGATGGTTGCTAGGGGTGCACTTTGGAATGCTTCAATTTTTAGTCTTGGAGGAACATCAGTTGAAGAAGTGAAAAGAGAGTACGTTGGGAAGAGCATTTTATGGGACCATGATATTAA...

CDS

Download CDS FASTA

543 bp · TkA02G177370|TK1151|CDS

ATGGAAGATAGACCAAGAGATCCTGCAAATTGGAGTGAAATTACACATGTAGATGCTCTTTCTATTCCAGTCATTGCCAATGATGATGTATTCGAATACCAAGATTTTCAGAACATTCGAACTGTTACAGGGACATCGTCAGTGATGGTTGCTAGGGGTGCACTTTGGAATGCTTCAATTTTTAGTCTTGGAGGAACATCAGTTGAAGAAGTGAAAAGAGAGTACGTTGGGAAGAGCATTTTATGGGACCATGATATTAA...

Protein

Download Protein FASTA

180 aa · TkA02G177370|TK1151|PROTEIN

MEDRPRDPANWSEITHVDALSIPVIANDDVFEYQDFQNIRTVTGTSSVMVARGALWNASIFSLGGTSVEEVKREYVGKSILWDHDIKSTKYTLKEMIIYYTLLELPEGRAVTKSESLADITIILFWDGGSIMNPSTQGNMELLLAREIEENVGVGTEMFYNYKLYDRIEYSFLCKAYSLH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G177370`
TK1151 ID	TkA02G177370
OH-1004 ID	LXL04_013662
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.300
Protein coverage (%)	TK1151 59.444 / OH-1004 32.239 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G177370`
Location	Chr02:45654219-45656707 (-)
Description	Similar to DUS2: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_013662` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002943 tRNA dihydrouridine synthesis Biological Process GO:0006397 mRNA processing Biological Process GO:0006400 tRNA modification Biological Process GO:0008033 tRNA processing Biological Process GO:0140374 antiviral innate immune response Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003725 double-stranded RNA binding Molecular Function
KEGG gene cross-reference	hsa:54920 mmu:66369 mmu:71916 sce:YNR015W spo:2540200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.522

Rank 1 · TkA02G177370 · TK1151

Nucleus0.336

Rank 2 · TkA02G177370 · TK1151

Mitochondrion0.122

Rank 3 · TkA02G177370 · TK1151

Peroxisome0.113

Rank 4 · TkA02G177370 · TK1151

Extracellular0.050

Rank 5 · TkA02G177370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01207Dus5-68 aa

PF30740DUF871743-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G177370	`PF01207`	Dus	5	68	3.5e-10	40.2
TkA02G177370	`PF30740`	DUF8717	43	82	0.28	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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