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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G168540
Reference: TK1151 Chr: Chr02 Coordinates: 43219318-43221360 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2043 bp · TkA02G168540|TK1151|cDNA

ATGGATCTTGATTTGCAGACCTGTGCCCGTCAATTACAAACCATCACTTCTCATCTTTTGACCAAACAAGGCAAACCATTACACCTCTTGTTTCTCAAAAAGGGCGTCTTCCCTTCCTCGATTACTTTGGCTAACCGTCTTCTTCAGATGTATGTTAAATGTGACCATTTGGATGATGCTCGGAAACTGTTTGATGAAATGCCTCAAAGAAACTGCTTCACCTGGAACTCTATGGTCGAAGGCTATGTCAAATCACGAAA...

CDS

Download CDS FASTA

2043 bp · TkA02G168540|TK1151|CDS

ATGGATCTTGATTTGCAGACCTGTGCCCGTCAATTACAAACCATCACTTCTCATCTTTTGACCAAACAAGGCAAACCATTACACCTCTTGTTTCTCAAAAAGGGCGTCTTCCCTTCCTCGATTACTTTGGCTAACCGTCTTCTTCAGATGTATGTTAAATGTGACCATTTGGATGATGCTCGGAAACTGTTTGATGAAATGCCTCAAAGAAACTGCTTCACCTGGAACTCTATGGTCGAAGGCTATGTCAAATCACGAAA...

Protein

Download Protein FASTA

680 aa · TkA02G168540|TK1151|PROTEIN

MDLDLQTCARQLQTITSHLLTKQGKPLHLLFLKKGVFPSSITLANRLLQMYVKCDHLDDARKLFDEMPQRNCFTWNSMVEGYVKSRNNQESLHLFNAMPHKNTFSWNMIISGSIKANKLDLARKFFNEMPVKNGVAWNSMIHGYAENRQSAEAINLFKDLKSSCDGVDIYVLATVFGACTDLLALKLGKIIHGYIVVNGVKIDSVLESSIVNMYGKCGDLDSASLMLHTLPYPDDFSLSSLISAYSNKGKLTDAKRIFSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G168540
TK1151 IDTkA02G168540
OH-1004 IDLXL04_011659
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G168540
LocationChr02:43219318-43221360 (+)
DescriptionSimilar to PCMP-E5: Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77010 Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial. No verified direct reference in this release
At4g19191 Pentatricopeptide repeat-containing protein At4g19191, mitochondrial. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011659 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G77010
ath:AT2G13600
ath:AT2G22070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.597
Rank 1 · TkA02G168540 · TK1151
Plastid0.227
Rank 2 · TkA02G168540 · TK1151
Nucleus0.052
Rank 3 · TkA02G168540 · TK1151
Cytoplasm0.031
Rank 4 · TkA02G168540 · TK1151
Cell membrane0.005
Rank 5 · TkA02G168540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10037MRP-S2733-76 aa
PF23276TPR_2435-97 aa
PF17049AEP142-88 aa
PF14559TPR_1943-70 aa
PF13041PPR_244-72 aa
PF01535PPR45-72 aa
PF13812PPR_345-72 aa
PF29070MSC6_N45-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G168540PF10037MRP-S2733760.008415.8
TkA02G168540PF23276TPR_2435971.5e-1041.8
TkA02G168540PF17049AEP142880.0006819.5
TkA02G168540PF14559TPR_1943701e-0939.3
TkA02G168540PF13041PPR_244722.1e-72239.7
TkA02G168540PF01535PPR45726.2e-82265.0
TkA02G168540PF13812PPR_345725.1e-1349.6
TkA02G168540PF29070MSC6_N451114e-0730.2
TkA02G168540PF13428TPR_1446677.2e-1142.4
TkA02G168540PF12854PPR_150679.3e-53176.4
TkA02G168540PF12854PPR_170989.3e-53176.4
TkA02G168540PF13041PPR_2711022.1e-72239.7
TkA02G168540PF13812PPR_371985.1e-1349.6
TkA02G168540PF01535PPR731016.2e-82265.0
TkA02G168540PF29070MSC6_N741574e-0730.2
TkA02G168540PF23276TPR_24761591.5e-1041.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49287Arabidopsis thalianasp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial54.400%Swiss-ProtHigh
P0C8Q2Arabidopsis thalianasp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial26.400%Swiss-ProtLow
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360037.300%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic28.100%Swiss-ProtLow
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial28.500%Swiss-ProtLow

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