TkA02G165040 | RubberDandelionOmics

Gene overview

TkA02G165040

Reference: TK1151 Chr: Chr02 Coordinates: 42379672-42382579 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1917 bp · TkA02G165040|TK1151|cDNA

AAGGTAACCAACCCAAAAATAATAAGCATCCAAATATGGTCCAAAAAGAGACAAGGTTTGGTAAAACGGAGAAGGGAAGAGGAGGGAGGCTAGTTCTGTTTGCAACTCAAACACTTTGTGCCTTTTTTCTTTTTAGTTTGCTTTACACAGAATTGACCTTTAAGGGTACTTCCCCACCCCTTCTCAACAATTAAAATGTAAGTTTTCTTTTAATTATGATCATCTCCTTTCTATTATGTTTTGTGCTACTTAAGGGGTGA...

CDS

Download CDS FASTA

1110 bp · TkA02G165040|TK1151|CDS

ATGAGCAAAATCCAAGTCCACCTTCAGCCGTCGCAATCGAATCTCACACTGACCGCCGGAATTAACAGCACCACCGTCGTCCGGCCCTATGCAATGCAAGATAGTCCCTACGTTATGAACTACATTACTCCGGTGACGATAACAACCGCCGAGCCAGCACGACGTACTTGTGATCATAACCACCAACCCCCCGCCGTGATTTTCTCATCCGGTGGATACACCGGAAACTTATTCCACGAATTCAACGAAAACATCATACC...

Protein

Download Protein FASTA

369 aa · TkA02G165040|TK1151|PROTEIN

MSKIQVHLQPSQSNLTLTAGINSTTVVRPYAMQDSPYVMNYITPVTITTAEPARRTCDHNHQPPAVIFSSGGYTGNLFHEFNENIIPLFITTRLFRSRVHFVVVDHKPSFLQKYRRVFPRLSDHEIINPAVDSSVHCFPAAVIGLKFHKFLGINTSENPQNLYSMPDFRQFIRQTYKLRTKKTVFDAQNPPVLLLISRQRTRKFLNQAEMVKMMEELGFRVIIASNDKEMSNVEKFSRVINSCSVMVGAHGAGLANEIFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G165040`
TK1151 ID	TkA02G165040
OH-1004 ID	LXL04_016245
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 73.307 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G165040

Location Chr02:42379672-42382579 (-)

Description Similar to XAT2: Alpha-1,3-arabinosyltransferase XAT2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10320`	Glycosyletransferase required for the proper composition and structural properties of released seed coat mucilage.	Highly Branched Xylan Made by IRREGULAR XYLEM14 and MUCILAGE-RELATED21 Links Mucilage to Arabidopsis Seeds.2015 · DOI: 10.1104/pp.15.01441 Xylans Provide the Structural Driving Force for Mucilage Adhesion to the Arabidopsis Seed Coat.2016 · DOI: 10.1104/pp.16.00211

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0330200`	Glycosyltransferase involved in the arabinosylation of xylan, the major hemicellulose (non-cellulosic component) of primary and secondary walls of angiosperms.	No verified direct reference in this release
`Os03g0567600`	Glycosyltransferase involved in the arabinosylation of xylan, the major hemicellulose (non-cellulosic component) of primary and secondary walls of angiosperms.	No verified direct reference in this release
`Os02g0329800`	Glycosyltransferase involved in the xylosylation of xylan, the major hemicellulose (non-cellulosic component) of primary and secondary walls of angiosperms.	XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.2012 · DOI: 10.1073/pnas.1202079109
`Os06g0707000`	Glycosyltransferase involved in the xylosylation of xylan, the major hemicellulose (non-cellulosic component) of primary and secondary walls of angiosperms.	A Novel Rice Xylosyltransferase Catalyzes the Addition of 2-O-Xylosyl Side Chains onto the Xylan Backbone.2018 · DOI: 10.1093/pcp/pcy003

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016245 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009664 plant-type cell wall organization Biological Process

GO:0010192 mucilage biosynthetic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0035252 UDP-xylosyltransferase activity Molecular Function

GO:0047517 1,4-beta-D-xylan synthase activity Molecular Function

GO:0052636 arabinosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10320

dosa:Os02g0329800

dosa:Os02g0330200

dosa:Os03g0567600

dosa:Os06g0707000

osa:4329203

osa:4329205

osa:4333275

osa:4342010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.368

Rank 1 · TkA02G165040 · TK1151

Endoplasmic reticulum0.246

Rank 2 · TkA02G165040 · TK1151

Lysosome / Vacuole0.111

Rank 3 · TkA02G165040 · TK1151

Cell membrane0.085

Rank 4 · TkA02G165040 · TK1151

Extracellular0.082

Rank 5 · TkA02G165040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04577Glyco_transf_61167-267 aa

PF04312DUF460201-242 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G165040	`PF04577`	Glyco_transf_61	167	267	1.9e-11	45.1
TkA02G165040	`PF04312`	DUF460	201	242	0.16	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SS43`	Arabidopsis thaliana	sp\|Q9SS43\|MUC21_ARATH Xylan glycosyltransferase MUCI21	35.000%	Swiss-Prot	Medium
`Q6ZFR0`	Oryza sativa subsp. japonica	sp\|Q6ZFR0\|XAT2_ORYSJ Alpha-1,3-arabinosyltransferase XAT2	38.600%	Swiss-Prot	Medium
`Q10I20`	Oryza sativa subsp. japonica	sp\|Q10I20\|XAT3_ORYSJ Alpha-1,3-arabinosyltransferase XAT3	38.000%	Swiss-Prot	Medium
`Q6Z7I3`	Oryza sativa subsp. japonica	sp\|Q6Z7I3\|XAX1_ORYSJ Beta-1,2-xylosyltransferease XAX1	37.900%	Swiss-Prot	Medium
`Q5Z8T8`	Oryza sativa subsp. japonica	sp\|Q5Z8T8\|XYXT1_ORYSJ Beta-1,2-xylosyltransferase XYXT1	37.500%	Swiss-Prot	Medium

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