TkA02G160640 | RubberDandelionOmics

Gene overview

TkA02G160640

Reference: TK1151 Chr: Chr02 Coordinates: 41196370-41198648 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1529 bp · TkA02G160640|TK1151|cDNA

AAGTGATTACGTCACCACCTCTATGGGCACACCTCATGGTTGCAACCATCGTCGTTAAGCATAAACCCTCTCTTCTGGTTCTCCCCCAAACCCACAAAATCGAACTCTTTAGCACCATCAATGGAGAAATTAAGAACAGCTGTAAATAAAATAGCTTACACACCCAAATCTCAAATACTCTCCACTCTCTCCCCTCTCCATCTCTCTCTCATCCCTCTCCTATTTCTCTCTTCCTCGCTCTACAAAGTCGCCCTCTCCTT...

CDS

Download CDS FASTA

921 bp · TkA02G160640|TK1151|CDS

ATGGTCGAGTTCATTGCAAATTGGTTGGCTAATGATATTGGGGTTTCACCTCTCATTCTCACCAGAGGCTATGGTGGTGCCGATGAAGCTAAAATGCTTCAAAGGCATTTTGATGGGACATCTGTGAAGATCGGTGTGGGTGCAAATCGCTCAGCCACTGCCAACTCTTTTTTTGATAGATATGGGTTTATATACCCACTTGAGATCGCATGTTTCAAGAAACAAATATCGGGTGTTTCTGATAAAATTGGAGTTGCAAT...

Protein

Download Protein FASTA

306 aa · TkA02G160640|TK1151|PROTEIN

MVEFIANWLANDIGVSPLILTRGYGGADEAKMLQRHFDGTSVKIGVGANRSATANSFFDRYGFIYPLEIACFKKQISGVSDKIGVAILDDGMQHISMSRNLELVMVNALSPWGNRHLLPFGPLREPLTSFSRAHAAIIHHADLVSDGSLSDIKSTILETNQFLPIFLSTMTPTHFFKLPSVSVPLPLGVVYQKIVLCVSAIGSPNSLVQRIQKMGPLFVDRLDYSDHHQFQSKDIKVMKARLELLKNKFGSDPAIVVTEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G160640`
TK1151 ID	TkA02G160640
OH-1004 ID	LXL04_016293
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.800
Protein coverage (%)	TK1151 100.000 / OH-1004 79.545 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G160640

Location Chr02:41196370-41198648 (-)

Description Similar to LPXK: Probable tetraacyldisaccharide 4'-kinase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20480`	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016293 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009245 lipid A biosynthetic process Biological Process

GO:2001289 lipid X metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0009029 lipid-A 4'-kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G20480

cpc:Cpar_0513

cph:Cpha266_0526

emi:Emin_0620

sat:SYN_01563

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.571

Rank 1 · TkA02G160640 · TK1151

Nucleus0.333

Rank 2 · TkA02G160640 · TK1151

Mitochondrion0.155

Rank 3 · TkA02G160640 · TK1151

Peroxisome0.059

Rank 4 · TkA02G160640 · TK1151

Plastid0.055

Rank 5 · TkA02G160640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02606LpxK3-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G160640	`PF02606`	LpxK	3	288	2.6e-36	126.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LEA0`	Arabidopsis thaliana	sp\|Q8LEA0\|LPXK_ARATH Probable tetraacyldisaccharide 4'-kinase, mitochondrial	48.600%	Swiss-Prot	Medium

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