TkA02G141790 | RubberDandelionOmics

Gene overview

TkA02G141790

Reference: TK1151 Chr: Chr02 Coordinates: 36629885-36630452 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

492 bp · TkA02G141790|TK1151|cDNA

ATGAAAGCCGTAGGAGACAACTCCAACACGTACATAAGATTCATATCAAATCAAATTTCTGAAAACATCCCACCATATCATCGTACTTGGGCTAAAGTTCCTGATGAATTGAAAGATATCATATATGAAGAGCTTCATCATTATTATGATATCGATAGTTATCGGGAGACCCCGGATTTAGTTAGAGAAGCTGTCTTTTCTGATTGCATGAGTAGATACAAGAGTCGTAAGCATGGATTCAAAAAACACTTTCTTGATCA...

CDS

Download CDS FASTA

492 bp · TkA02G141790|TK1151|CDS

ATGAAAGCCGTAGGAGACAACTCCAACACGTACATAAGATTCATATCAAATCAAATTTCTGAAAACATCCCACCATATCATCGTACTTGGGCTAAAGTTCCTGATGAATTGAAAGATATCATATATGAAGAGCTTCATCATTATTATGATATCGATAGTTATCGGGAGACCCCGGATTTAGTTAGAGAAGCTGTCTTTTCTGATTGCATGAGTAGATACAAGAGTCGTAAGCATGGATTCAAAAAACACTTTCTTGATCA...

Protein

Download Protein FASTA

163 aa · TkA02G141790|TK1151|PROTEIN

MKAVGDNSNTYIRFISNQISENIPPYHRTWAKVPDELKDIIYEELHHYYDIDSYRETPDLVREAVFSDCMSRYKSRKHGFKKHFLDHGGYDNLEMARRLPPGGMEEDVWNETINKLFLDKGYKKQSKQNAGNRAHHLYRSYRGTSSMASKRYKQVRKLNFYYF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G141790`
TK1151 ID	TkA02G141790
OH-1004 ID	LXL04_000794
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.900
Protein coverage (%)	TK1151 94.479 / OH-1004 8.657 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G141790`
Location	Chr02:36629885-36630452 (+)
Description	Similar to RRP44A: Exosome complex exonuclease RRP44 homolog A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000794` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006364 rRNA processing Biological Process GO:0016075 rRNA catabolic process Biological Process GO:0071031 nuclear mRNA surveillance of mRNA 3'-end processing Biological Process GO:0000176 nuclear exosome (RNase complex) Cellular Component GO:0000177 cytoplasmic exosome (RNase complex) Cellular Component GO:0000175 3'-5'-RNA exonuclease activity Molecular Function GO:0003723 RNA binding Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT2G17510 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.937

Rank 1 · TkA02G141790 · TK1151

Cytoplasm0.127

Rank 2 · TkA02G141790 · TK1151

Extracellular0.022

Rank 3 · TkA02G141790 · TK1151

Mitochondrion0.017

Rank 4 · TkA02G141790 · TK1151

Cell membrane0.012

Rank 5 · TkA02G141790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29174ECM9_C42-87 aa

PF29174ECM9_C113-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G141790	`PF29174`	ECM9_C	42	87	0.038	14.7
TkA02G141790	`PF29174`	ECM9_C	113	126	0.038	14.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card