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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G134640
Reference: TK1151 Chr: Chr02 Coordinates: 34780346-34783707 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1910 bp · TkA02G134640|TK1151|cDNA

GGAACTATATTCGTAATTCACTTGAGAAAGAAGCATCATCAAAACCCTAAAACCTATTCATTGCCGCATTGTTGTGGGTCTCGACTCTCAACCTCCCATTTTCCATTTTCGATTAGCAGGCGGCATAGAACCTGGATTCGCAGCAACTTTGATTAGAGAAAAATGGTTAAGAAGAAAGAGAGGTCCGTGAACGTTTCGGGAAAGCCAAAGCACTCTCTCGATGTCAACAGAGATGCCGGCAACAAGAACAAAAGCGGCGG...

CDS

Download CDS FASTA

1563 bp · TkA02G134640|TK1151|CDS

ATGGTTAAGAAGAAAGAGAGGTCCGTGAACGTTTCGGGAAAGCCAAAGCACTCTCTCGATGTCAACAGAGATGCCGGCAACAAGAACAAAAGCGGCGGCACCGCCCGTACCTCCGCCACCGTTCGTCGTCTTAAGATGTACAAGACGAGGCCGAAGCGTGACTCCAAAGGAACCATTCTCAAACACGAATTGCAGTCAAAGGAGTTGCCTTCTACTCGTATACAACCTGATCGCCGCTGGTTCGGTAACACAAGAGTAGT...

Protein

Download Protein FASTA

520 aa · TkA02G134640|TK1151|PROTEIN

MVKKKERSVNVSGKPKHSLDVNRDAGNKNKSGGTARTSATVRRLKMYKTRPKRDSKGTILKHELQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRLSSNYNVIMKERKLPMSLLNDHQKQARVHLLDTEPFADAFGPKGKRKRPKLVASDYESLLKRADGSHDAFEEKHGDEPEDPNADGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVIIQVLDARDPQGTRCRHLEKHLKEHCKHKHMILLLNKCDLTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G134640
TK1151 IDTkA02G134640
OH-1004 IDLXL04_016490
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G134640
LocationChr02:34780346-34783707 (-)
DescriptionSimilar to NUG2: Nuclear/nucleolar GTPase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g52980 GTPase involved in pre-60S ribosomal subunit maturation.
Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants.2011 · DOI: 10.1074/jbc.m110.200816

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0352400 GTPase involved in pre-60S ribosomal subunit maturation.
Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants.2011 · DOI: 10.1074/jbc.m110.200816
UniProt: A2XGQ1 GTPase involved in pre-60S ribosomal subunit maturation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016490 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042254 ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0016020 membrane Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference
ath:AT1G52980
dosa:Os03g0352400
hsa:29889
mmu:230737
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.743
Rank 1 · TkA02G134640 · TK1151
Cytoplasm0.215
Rank 2 · TkA02G134640 · TK1151
Mitochondrion0.060
Rank 3 · TkA02G134640 · TK1151
Cell membrane0.042
Rank 4 · TkA02G134640 · TK1151
Endoplasmic reticulum0.017
Rank 5 · TkA02G134640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08153NGP1NT46-171 aa
PF00350Dynamin_N89-134 aa
PF00025Arf203-259 aa
PF01926MMR_HSR1206-255 aa
PF00009GTP_EFTU210-259 aa
PF00350Dynamin_N210-255 aa
PF02421FeoB_N214-258 aa
PF08477Roc214-257 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G134640PF08153NGP1NT461712.6e-47161.0
TkA02G134640PF00350Dynamin_N891340.001919.0
TkA02G134640PF00025Arf2032590.01415.6
TkA02G134640PF01926MMR_HSR12062554.7e-2072.5
TkA02G134640PF00009GTP_EFTU2102590.001518.9
TkA02G134640PF00350Dynamin_N2102550.001919.0
TkA02G134640PF02421FeoB_N2142581.3e-0628.8
TkA02G134640PF08477Roc2142570.01915.9
TkA02G134640PF03193RsgA_GTPase2333640.0003421.2
TkA02G134640PF00025Arf2993420.01415.6
TkA02G134640PF00009GTP_EFTU3083320.001518.9
TkA02G134640PF02421FeoB_N3113741.3e-0628.8
TkA02G134640PF01926MMR_HSR13123774.7e-2072.5
TkA02G134640PF00350Dynamin_N3123410.001919.0
TkA02G134640PF08477Roc3123340.01915.9
TkA02G134640PF00009GTP_EFTU3443730.001518.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C923Arabidopsis thalianasp|Q9C923|NUG2_ARATH Nuclear/nucleolar GTPase 277.300%Swiss-ProtHigh
Q10LF7Oryza sativa subsp. japonicasp|Q10LF7|NUG2_ORYSJ Nuclear/nucleolar GTPase 274.500%Swiss-ProtHigh
A2XGQ1Oryza sativa subsp. indicasp|A2XGQ1|NUG2_ORYSI Nuclear/nucleolar GTPase 274.500%Swiss-ProtHigh

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