TkA02G123950 | RubberDandelionOmics

Gene overview

TkA02G123950

Reference: TK1151 Chr: Chr02 Coordinates: 32152655-32156019 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2252 bp · TkA02G123950|TK1151|cDNA

TTTAAGTTAAGATTTTTATTATTTTCGCTAATATAGATCCGGTTGACCCGGCGGTTCAACCGGTTGACCCGGCTGACCCGGGATCCGTTGGCAATGCCGGGGTGATAAAAAAACCGGGTTTTAAAACAACATCTCCTTCCCTCCCACTCCATTGTACCTCAGATGAAACCATGCCCTGAAACACCCCGGTTATCAAAACTGAAAGCTGTAACACTCGGCGAGCCACTCGCCTCCGATGATGATCTTATCTTACCCAGTCA...

CDS

Download CDS FASTA

1035 bp · TkA02G123950|TK1151|CDS

ATGAAACCATGCCCTGAAACACCCCGGTTATCAAAACTGAAAGCTGTAACACTCGGCGAGCCACTCGCCTCCGATGATGATCTTATCTTACCCAGTCATGATTTCTCCCAAAACGCCCACGTCCCGTCGTTCGAAAAGTACCTGGCGATGTACAAGCGGTCGATTGAAGACCCTGCTAGCTTCTGGTCTGACATAGCTTCCGAATTCTACTGGAAGAAGAAATGGGGTGAACAGGTTTACTCTGAAAATTTCGACATCAG...

Protein

Download Protein FASTA

344 aa · TkA02G123950|TK1151|PROTEIN

MKPCPETPRLSKLKAVTLGEPLASDDDLILPSHDFSQNAHVPSFEKYLAMYKRSIEDPASFWSDIASEFYWKKKWGEQVYSENFDIRKGNINIEWFKGGITNICYNCLDKNIESGNGDKIALHWEGNEPGVDDSLTYNQLLDKVSQLANYLKENGVRKSDSVIVYLPMLMELPITMLACARIGAVHSVVFAGFSADSLVQRIMDCKPKIVITCNAIKSGKKVINLKDIVDSALSESSQNGVSVGLCLTYANESAMKKEAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G123950`
TK1151 ID	TkA02G123950
OH-1004 ID	LXL04_013160
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.300
Protein coverage (%)	TK1151 95.640 / OH-1004 42.397 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G123950

Location Chr02:32152655-32156019 (-)

Description Similar to ACS: Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36880`	Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013160 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006068 ethanol catabolic process Biological Process

GO:0006083 acetate metabolic process Biological Process

GO:0006085 acetyl-CoA biosynthetic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0019413 acetate biosynthetic process Biological Process

GO:0019427 acetyl-CoA biosynthetic process from acetate Biological Process

GO:0019542 propionate biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G36880

hsa:55902

lbl:LBL_0125

lic:LIC_13404

mmu:60525

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.788

Rank 1 · TkA02G123950 · TK1151

Nucleus0.314

Rank 2 · TkA02G123950 · TK1151

Mitochondrion0.064

Rank 3 · TkA02G123950 · TK1151

Peroxisome0.063

Rank 4 · TkA02G123950 · TK1151

Endoplasmic reticulum0.039

Rank 5 · TkA02G123950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09373PMBR43-53 aa

PF16177ACAS_N47-107 aa

PF00501AMP-binding115-336 aa

PF09373PMBR133-155 aa

PF10886DUF2685148-160 aa

PF10886DUF2685226-258 aa

PF16177ACAS_N264-273 aa

PF10886DUF2685304-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G123950	`PF09373`	PMBR	43	53	0.19	12.6
TkA02G123950	`PF16177`	ACAS_N	47	107	1.2e-18	67.4
TkA02G123950	`PF00501`	AMP-binding	115	336	3.4e-46	158.5
TkA02G123950	`PF09373`	PMBR	133	155	0.19	12.6
TkA02G123950	`PF10886`	DUF2685	148	160	0.23	12.6
TkA02G123950	`PF10886`	DUF2685	226	258	0.23	12.6
TkA02G123950	`PF16177`	ACAS_N	264	273	1.2e-18	67.4
TkA02G123950	`PF10886`	DUF2685	304	310	0.23	12.6
TkA02G123950	`PF16177`	ACAS_N	321	336	1.2e-18	67.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DGD6`	Arabidopsis thaliana	sp\|B9DGD6\|ACS_ARATH Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal	72.600%	Swiss-Prot	High

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