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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G120100
Reference: TK1151 Chr: Chr02 Coordinates: 31292189-31293284 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

840 bp · TkA02G120100|TK1151|cDNA

ATGGATACCGGCACTCGATCACCATCACCTACCACCGTAGAAAGGGGTGATTGGGGTGATCTAGACATACTGCAAAACCATTGGGGTCCACGGGGAAAACGAGGAAATCCCGGAAACCACCGTTGGCGTAACCGCCATGGACTAACGAGCAGCATTTTCCTTTACTTGGAATCAGTCACTCACTCGAGGGGAAGGACGGATCCTAGCTGCAAGGAGGCAGTGATGCTGTTTCTTGTTGCCGGCAGTGATGAACACCCGAA...

CDS

Download CDS FASTA

840 bp · TkA02G120100|TK1151|CDS

ATGGATACCGGCACTCGATCACCATCACCTACCACCGTAGAAAGGGGTGATTGGGGTGATCTAGACATACTGCAAAACCATTGGGGTCCACGGGGAAAACGAGGAAATCCCGGAAACCACCGTTGGCGTAACCGCCATGGACTAACGAGCAGCATTTTCCTTTACTTGGAATCAGTCACTCACTCGAGGGGAAGGACGGATCCTAGCTGCAAGGAGGCAGTGATGCTGTTTCTTGTTGCCGGCAGTGATGAACACCCGAA...

Protein

Download Protein FASTA

279 aa · TkA02G120100|TK1151|PROTEIN

MDTGTRSPSPTTVERGDWGDLDILQNHWGPRGKRGNPGNHRWRNRHGLTSSIFLYLESVTHSRGRTDPSCKEAVMLFLVAGSDEHPKPSQERQVLHAIAYASTVTITTKDMSQPRKLTGTKSGDRRCAERRRERPPETSRCLAVAREAVTGDERRREGSSEVRPGLEVTGVGEKSVAGCGEEKPNSLLPAMAETVAAAASPEEMMIAGGRPGRGWSRSEVSRRWVSNGAWVSLGVADLRRRARERDGNSSKVPYHARVIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G120100
TK1151 IDTkA02G120100
OH-1004 IDLXL04_003199
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)90.300
Protein coverage (%)TK1151 11.111 / OH-1004 7.990
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G120100
LocationChr02:31292189-31293284 (+)
DescriptionSimilar to ACBP4: Acyl-CoA-binding domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003199 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006869 lipid transport Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009611 response to wounding Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid Biological Process
KEGG gene cross-reference
ath:AT1G61340
ath:AT3G05420
ath:AT4G05010
ath:AT5G27630
dosa:Os03g0835600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.390
Rank 1 · TkA02G120100 · TK1151
Cell membrane0.339
Rank 2 · TkA02G120100 · TK1151
Cytoplasm0.318
Rank 3 · TkA02G120100 · TK1151
Endoplasmic reticulum0.062
Rank 4 · TkA02G120100 · TK1151
Mitochondrion0.041
Rank 5 · TkA02G120100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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